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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGgttattgtaataaatctcatttctatcttcctgttttcagactaaatgacatttttccatagcattttttaggagattctgcttgatgtaaatattcaagtatttggtttcttttaacctatgcttttgtccaactcttcaaatttctgattacag

Basic information

species Glycine max
transcript GLYMA06G00520.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 26
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGgtta---ttgtaataaatctcatttctatcttcctgttttcagactaaatgacatttttccatagcattttttaggagattctgcttgatgtaaatattcaagtatttggtttcttttaacctatgcttttgtccaactcttcaaatttctgattacag
 || || ||  |||| ||  |||||||    |||||||||||| | || || ||||||||||||||||| || |||||||| |||||||| ||||||||||| |   |||| | ||| ||  ||   |     |  |||    |  || |   |    |  | |||  |    | || ||||  |   ||| || | |   |    ||| | ||| ||| ||| |                                  
TATTACCTTCATATTGAAACTGGACACTGCAACCTTTATGCATCTCGTAGGTTCCCTTGAATCTGGACTCAAGGGGTTGGACACAAGTATTTCATCACAGgtgagaattgtgacaaaact-gttaagacacatcaatttatcaagaaattcttaaagcttta-agc--tgcaaaagatattcctcgaaatgcaactttctgaagcattgatatctattatcctttcag-------------------------------

upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 26
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGgttattgtaataaatctcatttctatcttcctgttttcagactaaatgacatttttccatagcattttttaggagattctgcttgatgtaaatattcaagtatttggtttcttttaacctatgcttttgtccaactcttcaaatttctgattacag
 ||   |||| |||| ||  |||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||  ||||| ||| ||||||| ||||||||  |||         |||  | || ||   |  || | || |||      | || ||     ||  ||            ||  ||||  |||||    | |    ||||                                            
TATTGTTTTTATATTGAATCTGGATACAAACACCTTTATGCATATAGTTGGTTCCCTTGAATCTGGTCTTAAGGGTCTGGATGCAAATATCTCAGCACAGgtttgtgt---------catgccaatattttaggatttatac-aaacatttgtattgcaactttttccttttctatcatcatttattgtatgtattct--cactccacttct--------------------------------------------