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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGgttattgtaataaatctcatttctatcttcctgttttcagactaaatgacatttttccatagcattttttaggagattctgcttgatgtaaatattcaagtatttggtttcttttaacctatgcttttgtccaactcttcaaatttctgattacag

Basic information

species Glycine max
transcript GLYMA06G00520.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 26
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGgtta---ttgtaataaatctcatttctatcttcctgttttcagactaaatgacatttttccatagcattttttaggagattctgcttgatgtaaatattcaagtatttggtttcttttaacctatgcttttgtccaactcttcaaatttctgattacag
|| || || |||| || ||||||| |||||||||||| | || || ||||||||||||||||| || |||||||| |||||||| ||||||||||| | |||| | ||| || || | | ||| | || | | | | ||| | | || |||| | ||| || | | | ||| | ||| ||| ||| |
TATTACCTTCATATTGAAACTGGACACTGCAACCTTTATGCATCTCGTAGGTTCCCTTGAATCTGGACTCAAGGGGTTGGACACAAGTATTTCATCACAGgtgagaattgtgacaaaact-gttaagacacatcaatttatcaagaaattcttaaagcttta-agc--tgcaaaagatattcctcgaaatgcaactttctgaagcattgatatctattatcctttcag-------------------------------

upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 26
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGgttattgtaataaatctcatttctatcttcctgttttcagactaaatgacatttttccatagcattttttaggagattctgcttgatgtaaatattcaagtatttggtttcttttaacctatgcttttgtccaactcttcaaatttctgattacag
|| |||| |||| || |||| |||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||| ||| ||||||| |||||||| ||| ||| | || || | || | || ||| | || || || || || |||| ||||| | | ||||
TATTGTTTTTATATTGAATCTGGATACAAACACCTTTATGCATATAGTTGGTTCCCTTGAATCTGGTCTTAAGGGTCTGGATGCAAATATCTCAGCACAGgtttgtgt---------catgccaatattttaggatttatac-aaacatttgtattgcaactttttccttttctatcatcatttattgtatgtattct--cactccacttct--------------------------------------------