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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACATCATGGGCACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCGATTTCCTTGTTAATCTACAAGgtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttgtgctgcttatcgttttggatgaataactgattttttgtatatataatgagtacaccatgttcttttggaatgataagttgttccttattgatag

Basic information

species Glycine max
transcript GLYMA05G30530.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 18
TGGACATCATGGGCACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCGATTTCCTTGTTAATCTACAAGgtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttgtgctgcttatcgttttggatgaataactgattttttgtatatataatgagtacaccatgttcttttggaatgataagttgttccttattgatag
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TGGACACCATGGACACATTCTTGCCCTCTATGTACAAACACGGGGAGATTTCATTGTTGTTGGTGATCTGATGAAATCAATCTCTTTGTTAATTTATAAGgtaagat---gactaatcttcaagtaatccct-tgtccttttggcag----caagtatggcgttccctggagttaaaagagtgttg-tgtttgtttgttactcttatcgtcttgttaatggatgtctgattggtcctttttttattttcag---