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21 5' 3' |
AAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaattaagttgatacaattttcccacataaaacatatttaattttatgaaaatttaatggggaggatgtaaagctactgttgaacaatcttctctt...
species | Glycine max |
transcript | GLYMA05G03970.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCTEST: gi|23729024|gb|BU762588.1|BU762588
genomic: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... cattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCTEST: gi|6845818|gb|AW348108.1|AW348108
genomic: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... cattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: NNGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCTEST: gi|33388995|gb|CA852202.1|CA852202
genomic: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... cattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCTEST: gi|31310152|gb|CD395355.1|CD395355
genomic: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... cattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: CTGGTGAAGAGGAGACATGGCAGTTATCACGGTTTTATCCCATAATAGAG GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCTEST: gi|19347362|gb|BM892242.1|BM892242
genomic: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... cattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: CTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... cattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaattaagttgatacaattttcccacataaaacatatttaattttatgaaaatttaatggggaggatgtaaagctactgttgaacaatcttctctt
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggagg