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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGAGAATCCTTGAAGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctctcttttctttctctagttatgtgattctcttataacttccctttaatataaattttctaattctctaaattaatcattccattgttat...

Basic information

species Glycine max
transcript GLYMA04G36770.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 15
CCAGGAGAATCCTTGAAGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctctcttttctttctctagttatgtgattctcttataacttccctttaatataaattttctaattctctaaattaatcattccattgttat
|| ||||||||  |||  |||||||||| | | ||||||||||| ||||||||||| ||| |||| || ||||||||||||||||| ||  |||| |  |  |    ||  |   | || || |   ||  ||  |   | |||||| ||  | |   ||    |||     |    |||  |  | 
CCTGGAGAATCACTGAGAGATTTCTACAAGAGGACAAATATGTACTGGCAAATGGCTGCCTATGAGCACACTCAACACACTGGAAAGgttagtttccatttctcgaatttcc--atcat-tggtcagctagtatatcatccttaataaaacgtgttgcatg---taatcctgtacacccaacggcag

upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
CCAGGAGAATCCTTGAAGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctctcttttctttctctagttatgtgatt-ctcttataacttccc-tttaatataaattttctaattctctaaattaatcattc-cattgttat
|| |||||| | |||||||||||||| | ||| ||||||||||| ||||||||||| ||| | || ||||| ||||| ||||| || ||| | ||  ||| | |  ||     |   || | ||  ||| |||   |  |   ||  |       ||   ||  | | | | |    ||  ||||||   
CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag-

upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
CCAGGAGAATCCTTGAAGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctctcttttctttctctagttatgtgattctcttataacttccctttaatataaattttctaattctctaaattaatcattccattgttat----
|| |||||| |||||||||| ||||| | |||||| ||| |||| |||||||||||||| ||||| || ||||||||||||||||| ||  |||       |||  | |   ||| |    ||   | |  |  |||  || |  |  |   | |  ||||  ||  |  ||||| |  |  || |     
CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatat---tagctggtagacattttgctctcttagctcttgttcattgtcttcaatttgcttgaccaatcaattgag-gtgaaggta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9903008|gb|BE611976.1|BE611976
EST:     ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAA                         GAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
genomic: ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttc ... ttcatcatagGAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
EST: gi|193480934|gb|FK444373.1|FK444373
EST:     ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAA                         GAACTCCGCAAGG
genomic: ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttc ... ttcatcatagGAACTCCGCAAGG
EST: gi|11688791|gb|BF596467.1|BF596467
EST:     ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAA                         GAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
genomic: ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttc ... ttcatcatagGAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
EST: gi|21286225|gb|BQ474096.1|BQ474096
EST:     ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAA                         GAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
genomic: ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttc ... ttcatcatagGAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
EST: gi|26048263|gb|CA784790.1|CA784790
EST:     ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAA                         GAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA
genomic: ATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttc ... ttcatcatagGAACTCCGCAAGGATGGTTTTGATCTTGCTGAAGCTCGGTACAGGGAGCTA