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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCACAGTGCGAGCTTATATATGGAAGAAATCAGATGACTTGGTTCTAAATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggtatttcttttttaactgatgtgaatgttgataaaagtgatcataggttattaataatttattctctttcagattggaggaaagtgagcttta...

Basic information

species Glycine max
transcript GLYMA03G40440.3
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.3 (Glycine max), 5'ss of exon 18
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 18
-----------------------AGCCACAGTGCGAGCTTATATATGGAAGAAATCAGATGACTTGGTTCTAAATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggtatttcttttttaactgatgtgaatgttgataaaagtgatcataggttattaataatttattctctttcagattggaggaaagtgagcttta
                       ||||||||| || |||||||||||||||||| | || ||| ||||||| ||||||||                                                                                                                                               
GTCTTATCCCCTGACATGAGCTTAGCCACAGTCCGCGCTTATATATGGAAGAAACCTGAGGACCTGgttcttaattacag-----------------------------------------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687792|gb|BF595468.1|BF595468
EST:     ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAG                         GTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
genomic: ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggta ... atatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
EST: gi|192313103|gb|FK003699.1|FK003699
EST:     ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAG                         GTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
genomic: ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggta ... atatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
EST: gi|192313088|gb|FK003698.1|FK003698
EST:     ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAG                         GTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT
genomic: ATTACAGACTAGTTCAAGGCAGTTGACTACAAATTGCATATGCATCAGAGgtgggcggta ... atatttgcagGTTTTCTTGTGATTATGTAAAAATACTTATCAACACCAATTCTTCTTGGGT