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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcatgattccttgattcaggacctgtgcaattactaatttatattcccactgtttactgtttatgttttatgagatttcagttagttaagaact...

Basic information

species Glycine max
transcript GLYMA03G35020.2
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 18
GTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcatgattccttgattcaggacctgtgcaattactaatttatattcccactgtttactgtttatgttttatgagatttcagttagttaagaact-
 ||||||||||||||||| | |   |||   ||||| | |||   | |  | ||||||||||||||||||| |||||||||| | || ||||||||| |||||| ||  |  | |  ||   |  ||    ||     | ||| || |     | |||  | |  ||||  | |  |   |   |  |  |    |   | 
ATGGATTGATTTTCCAAGAGCTCCACAAGTACTTCCAAATGGTAAATTCATCCCAGGGAATAACAACAGTTATGATAAATGCCGTCGAAGATTTGACCTGgtaactttctt-tgctctgtcacctgattattgatgaaaataagttctgcattccctggattcaatttagatatctttttacccccttctgcagtgtttta

upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 18
GTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttca-------tgattccttgattcaggacctgtgcaattacta-atttatattcccactgtttactgtttatgttttatgag-atttcagttagttaagaact------------------------------------------------
 ||||| ||||||||||| |||  ||||  |||||| | ||||    |  |||| ||||||||||| || |||||||||||| | |||||||||||| | ||||||| |       |  |   ||  |||      | || | | || | || | | ||   |    || || |  |    | | ||   ||  |  ||    |  |||                                                
ATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCATTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaactgtgctactatattctttcgacttatctggattgaccacatatttcttggtaaaacttgctttggaaagatcaagaatgttctatataagctaatactaccatatgttatcggtgttgttgaatacaattttaatccctttttcag

upper sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 18
GTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcatgattccttgattcaggacctgtgcaattactaattta-tattcccactg-tttactgtttatgttttatgagatttcagttagttaagaact----
 ||||| ||||||||||| |||   |||   ||||| | |||     |  ||||||||||||||||||||| ||| |||||  | || ||||||||| ||||||  |     ||| ||||||  | |   || ||| |    ||||| | || |||||| |  | || || |  |     || |  || |    ||    ||    
ATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCTGgtaaact-----ttctttgattgtgcaaaagtccaagtttgtatttacttttaccactgatccagtgctt-taatcagcaaggtgccattataatagttccttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522391|gb|BU081202.1|BU081202
EST:     TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTG                         GGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
genomic: TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcat ... gcttaatcagGGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
EST: gi|151398683|gb|EV268554.1|EV268554
EST:     TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTG                         GGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
genomic: TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcat ... gcttaatcagGGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
EST: gi|18040842|gb|BM309136.1|BM309136
EST:     TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTG                         GGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
genomic: TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcat ... gcttaatcagGGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
EST: gi|15662274|gb|BI699645.1|BI699645
EST:     TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTG                         GGTGATGCGGACTATCTAAGATATCGAGGGATG-TTTAATTTGATCAGGCC
genomic: TTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcat ... gcttaatcagGGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
EST: gi|10236612|gb|BE805500.1|BE805500
EST:     TCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTG                         GGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC
genomic: TCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGgtaagttcat ... gcttaatcagGGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCC