Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGCTGTATTCCACAATGCAAGTACGCGGTTTTGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGgtaatgtatcttcccgaaatgctatcattattagtgacagtgatttcattttctcatctggtcttggttatattaattattgaacag
Basic information
species | Glycine max |
transcript | GLYMA03G12240.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 18
TGCTGCTGTATTCCACAATGCAAGTACGCGGTTTTGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGgtaatgtatcttcccgaaatgctatcattattagtgacagtgatttcattttctcatctggtcttggttatatt-aattattgaacag
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TGCTGCAGTTTTCCATAATGCAAGTACCCGATTTTGTGATGGAGCACGTTTTGGACTTGGTGCAGAGgtatggaatcttccaactatccagctgttagaaatcaacatgaaagaatcttggtttcatttgttggtcttgtttgatgtttgaatag
upper sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S22_40V6.2 (Physcomitrella patens), 5'ss of exon 18
TGCTGCTGTATTCCACAATGCAAGTACGCGGTTTTGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGgta---atgtatcttcccgaaatgctatcattattagtgacagtgatttcattttctcatctggtct-------tggttatattaattattgaacag---
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TGCCGCTGTATTTCATAATGCCAGTACCCGCTTTTCTGATGGTGCTCGTTTTGGGCTTGGTGCTGAGgtgcgtatacttctttcctacgtgcattgatggtggaacatgtaactttcgactttttatacctcctcatggcatggctgtgtaatttttttttcttattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6718516|gb|AW306163.1|AW306163EST: TGTGATGGAGCACGCTTTGGGCTTGGTGCAGAG GTTGGAATTAGTACAAGTCGAATTCATGCTCGAGGTCCTGTAGGAGTTGAG
genomic: TGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGgtaatgtatc ... tattgaacagGTTGGAATTAGTACAAGTCGAATTCATGCTCGAGGTCCTGTAGGAGTTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGCTGTATTCCACAATGCAAGTACGCGGTTTTGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGgtaatgtatcttcccgaaatgctatcattattagtgacagtgatttcattttctcatctggtcttggttatattaattattgaacag
- - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - GGAGCA