Sequence
atgc intronic sequence ATGC exonic sequenceATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTACGCTGAGCAGgtttgttgtttttcctaatttcattaacttgataactgttgcaatgttgacatagtcttttggaacggaagttctttatttatttttttgtttggaaaca...
Basic information
species | Glycine max |
transcript | GLYMA03G03120.2 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 18
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 5'ss of exon 18
ATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTACGCTGAGCAGgt-------ttgttgttttt----cctaatttcatta-acttgataact--gttgcaatgttgacatagtcttttggaacggaagttctttatttatttttttgtttggaaaca----------------------------------------------------------------
|| |||||||| | |||||||| |||||||| |||||| ||||||||||||| ||||||| |||||||| || || || |||||||| || ||| | |||||| || | ||||| | | ||| || | | || | || || | | || | | | | | |
ATAAACAACAACCTTCGCTGCTACGACCTTGCCATGGAGTTAAGTAATAGCACTTTAGAAGCTCTTCCACAAAATTATGCAGAGCAGgtaatccagctgccagtttctgagctcaatttcgttgcaattgattattttgtttggatat-gtcaaattccactgcatcatgcccactctcagtcccactatactccacgtctatgtgcacatacactcttgtttgcatactaataaaatgcttctctaatgtggtgtttctgtcag
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 17
ATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTACGCTGAGCAGgtt-tgttgtttttcctaatttcattaacttgataactgttgcaatgttgacatagtcttttggaacggaagttctttatttatttttttgtttggaaaca
|||||||||||| | ||||||||||| || ||| ||||||| |||| |||||| | ||||| ||||||||||| || |||||||||||| || ||| || |||| | | | | || || | | || | || | || || | | || |
ATTAACAACAATCTACGCTGCTATGATCTAGCATTGGAGCTGAGTAGCAGCACCTTGGAAGCTCTTCCACAGAATTATGCTGAGCAGgttatgccgttattttctttttcccctgcatttttttcactcttttgaggaagaggccagttagctttcaattaaagagttcatggtctgacctgcccat-
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 17
ATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTACGCTGAGCAGgtt-tgttgtt-tttcctaatttcattaacttgataactgttgcaatgttgacatagtcttttggaacggaagttctttatttatttttttgtttggaaaca
|||||||||||| | ||||||||||| || ||| ||||||| |||| |||||| | ||||| ||||||||||| || |||||||||||| || ||| ||| || || | | | | | | || | | || | || | | || || | | | |
ATTAACAACAATCTACGCTGCTATGATCTAGCATTGGAGCTGAGTAGCAGCACCTTGGAAGCTCTTCCACAGAATTATGCTGAGCAGgttatgccgttattttctttttcccctgcatcttttttcactctttagaggaagaggccagttagctttcaattaatgagttcatgatctgaccagccca--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990484|gb|BI316157.1|BI316157EST: AGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTACGCTGAGCAG GTTAATTTTGAAGATACCTGTAAGGGATTTCTTGAGGTAGCTAAG
genomic: AGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTACGCTGAGCAGgtttgttgtt ... ttcactacagGTTAATTTTGAAGATACCTGTAAGGGATTTCTTGAGGTAGCTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTACGCTGAGCAGgtttgttgtttttcctaatttcattaacttgataactgttgcaatgttgacatagtcttttggaacggaagttctttatttatttttttgtttggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG