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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGAAGCAGAAATTTTAAGTGCGTTAAATTCAGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGgtaaattatatctatctagttttatgtagttcctagttttatgtatacctgttataataaattttatgtaagtttacatagatagctccagaacacagtt...

Basic information

species Glycine max
transcript GLYMA02G40490.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G58270.1 (Arabidopsis thaliana), 5'ss of exon 17
AACAGAAGCAGAAATTTTAAGTGCGTTAAATTCAGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGgtaaattatatctatctagttttatgtagttcctagttttatgtatacctgttataataaattttatgtaagtttacatagatagctccagaacacagtt
|||||| ||||| ||  | |  ||  | ||  || |||| | |||  |||| || || |||||||| |||||||| |||||||| ||||| |||||||||||   || ||  ||  |||| ||    |  |  ||| |  | | |    |||| |   | |  | |      |       |  ||               
AACAGAGGCAGAGATACTGAACGCACTCAAGGCACTAGCGAGTAACAGGACATCTATCTTCATTGCCCACAGGCTGACCACTGCGATGCAATGTGACGAGgt---ttgtag-taaatagtgtttgtcaact--tagctcaaagaaacaatgtttttgcataactgaaacttttggttgcgggcag---------------

upper sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 21
AACAGAAGCAGAAATTTTAAGTGCGTTAAATTCAGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGgtaa-----attatatctatc----tag-ttttatgtagttccta---gttttatgtatacctgttataataaattttatgtaagtttacatagatagctccagaacacagtt
||||||  |||| || |||| |||  | ||  || ||||||||||||| ||||| || || || || || || ||||| ||||| |||||||||||||||||||     ||| ||   | |    ||| |||| || | |||| |   | ||  | ||||      | | || ||||  || |||| | | |   ||  |             
AACAGAGTCAGAGATATTAAATGCACTGAAGACATTAGCAAATAATCGAACTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgtaactattattgtagtgaccatgctagattttgtgaatttcccaagaggttactttatatgcaccacattacatttattgcaagtattcttttttatat-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341587|gb|CO982904.1|CO982904
EST:     CTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAG                         ATCATTGTTTTGGAAAATGGGAAGGTGATTGAGCAAGGACCCCATGAAGTG
genomic: CTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGgtaaattata ... caatgttcagATCATTGTTTTGGAAAATGGGAAGGTGATTGAGCAAGGACCCCATGAAGTG