Sequence
atgc intronic sequence ATGC exonic sequenceATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAGgttagtgtcatccttaattcaggaaatatggattgactaaagtatacgttattagtgctcctgcacttactatctatatatgttag
Basic information
species | Glycine max |
transcript | GLYMA02G39390.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os05g07130.2 (Oryza sativa), 5'ss of exon 18
ATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAGgttagtgtcatcctt----aattcaggaaatatggattgactaaagtatacgttattagtgctcctgcacttactatctatatatgttag
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ATATGGACCAGCACGCTTCAGAGGACAATTTTGACAGCAAGTCCAATAGTTGGATTCCCAAAGgtaatcaggaaagttttggagtatttcttacataactcttgcaaggtagttatttatatgggcgttgc-ttaacaattgttgtttgcag-
upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G021846_T01 (Zea mays), 5'ss of exon 18
ATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAGgttagtgtcatccttaattcaggaaatatggattgactaaagtatacgttattagtgctcctgcact-tactatctatatatgttag---
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ATATGGACCAGTACCCTTCAGAGAACAATTTTGACAGCAAGTCCAATTGTTGGATTCCCCAAGgtatttggt-tacacgatttaggagtcttc--ttaaagaactgttgctatgtaagtacagcaagattgctcgacttgtgt-tatttgtag
upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 18
ATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAGgttagtgtca-tcctta--attcaggaaatatg---gattgac-taaagtatacgttattagtgctcctgcacttactatctatatatgttag--------
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ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTTGGGTTCCCAAAGgttggtgtgaatccttagaatgttaggactatgtttggttcccataaaatttaagggaa-agaaaaaatgaaagaaaataaaaaataggtttaaactcaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17024057|gb|BM095091.1|BM095091EST: CACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAG ATACAATGGCGCGCACTTGATGAGATAAATGCCGGTGTGTGTGATGGGAAG
genomic: CACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAGgttagtgtca ... tatatgttagATACAATGGCGCGCACTTGATGAGATAAATGCTGGTGTGTGTGATGGGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAGgttagtgtcatccttaattcaggaaatatggattgactaaagtatacgttattagtgctcctgcacttactatctatatatgttag
- - - - - - - CTGCAG