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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatcaagtgctaaagtgactggatctatctaaatttttttatttattcttatcatgaaatgattttcag

Basic information

species Glycine max
transcript GLYMA02G39360.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 18
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttg---aatcaagt---gctaaagtgactggatctatctaaatttttttatttattcttatcatgaaatgatttt-cag
|||||  | ||||| || || ||||| |||||||| |||||||| |||||||| || |||||||||||     | ||||   |||    || |||  |||||    | |   |    |  |||  | |    || |||   |||
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctg--tctattattactggctggggtggtctatttacaccattattgaacag

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 18
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttg---aatcaagt---gctaaagtgactggatctatctaaatttttttatttattcttatcatgaaatgatttt-cag
|||||  | ||||| || || ||||| |||||||| |||||||| |||||||| || |||||||||||     | ||||   |||    || |||  |||||    | |   |    |  ||   | |    || |||   |||
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctg--tctattattactggctggggtggtccatttacaccattattgaacag

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatcaagtgctaaagtgactgga-tctatctaa-atttttttatttattcttatcatgaaatgattttcag
|||||||| || |||||||| ||||| ||||||||||| ||||| |||||||| || || ||||||||          | | ||   || | | |||||    |||| || ||||||   | | |       |   |||
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtgttcagttatgttcttgaaatgtatctgttgttttcttgtttattaacaactt----ccttgcacag

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatcaagtgctaaagtgactggat----ctatctaaatttt-tttatttattcttatcatgaaatgattttcag-----------------------
||||| || || |||||||| ||||| |||| |||||| ||||| |||| ||| ||||||||||||||  || | | |     |   | |||     | | ||  ||||    ||| |    |  | || |  ||   |                          
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttg--tcgacttcagttatttttagatatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatcaagtgctaaagtgactggatctatctaaatttttttatttattcttatcatgaaatgattttcag--
||||| || || |||||||| ||||| |||| |||||| ||||| |||| ||| ||||||||||||||  || | | |     |     |||  ||||   ||||  | ||| | |  || |  || |   ||  |   
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttg--tcgacttcagttattttcagat--atcttttttttaatgttt-tgcccattaacaacttccttggacag

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatc---aagtgctaaagtgactggatctatctaaatttttttatttattcttatcatgaaatgattttcag
|||||| | |||||||| || |||||||||||||||||||| ||||||||||| || ||||||||| ||  |   ||||| || | | ||| | ||||| | ||| |  |  ||| |||| |  ||    |   ||||||
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagtgttaca-taacttgttctatttgaatgtagtatttttttctaactatatggtatatttcag