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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttattatgtcatttgtttatcttcctttgaatttttcttttcctttattttaaatattttttttaaaactttttacccttcatatgagccattt...

Basic information

species Glycine max
transcript GLYMA02G17410.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttattatgtcatttgtttatcttcctttgaatttttcttttcctttattttaaatattttttttaaaactttttacccttcatatgagccattt--
|||||||||||||||||||| | ||| ||||| || ||||| ||||| |||||||||||||||||||||||||| || || |||||   |  ||| |   |||  |  |||        ||    | | |   ||   | | | | |||  |||  |  || |   | |     || |   | |  
TGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaattgta--attgatcaatcac------aacgcctttctgaattccctgtga-tgtttgctttctagtttatcttcttcatcttgtgttgtatag

upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttattatgtcatt-tgtttatcttcctttgaat---ttttcttttcctttattttaaatattttttttaaaact-ttttacccttcatatgagccattt
|||||||| || || ||||||||||||||||| || ||||| || || |||||||||||||| ||||| |||||||| || |||||   |  |  |  |  || || | || ||  || ||||   || || |||     |  ||  |||||     |    |  |||   ||  |||||         
TGGTTTGGCGAGGGTGAGAAATATGTCAAAGCTGTGTTTTCACTTGCAAGCAAAATTGCTCCTAGTGTCATTTTTGTGGATGAGgtcagtcaacaaaattcttatggtcattttttttggaatgaattgtcgtttggcccaccttttatattaccaatgtttcagtttggaccaccatatacct-----

upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 18
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctt-------tattatgtcatttgtttatcttcctttgaatttttcttttcctttatttta-aatattttttttaaaactttttacccttcatatgagccattt-----------------------------------
||| ||||||||||||| ||||  || ||||| || ||||| ||||| || ||||||||||||||||| |||||||| ||||||||   ||       | || ||     ||   |  |||  || | ||  ||| | ||   |    | ||||| | |  |    |  |      || ||     |  ||                                    
TGGCTTGGTGAAGGAGAAAAATTCGTGAAAGCTGTTTTTTCACTGGCAAGTAAAATTGCTCCAAGTGTAATTTTTGTGGACGAGgtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggacaccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctcatttatcctgctcttgtttttattttttag

upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G157621_T02 (Zea mays), 5'ss of exon 22
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttattatgtcatttgtttatcttcctttga--atttttcttttcctttattttaaatattttttttaaaactttttacccttcatatgagccattt
|||||||| || ||||| |||||||| ||||| || ||||| || || ||||||||| |||| ||||||||||| || || ||||||          || ||||  ||| |   |  |||  || |  || |  | | ||      ||  ||  | |    ||| |  |||  |||| ||      
TGGTTTGGAGAGGGAGAAAAATATGTGAAAGCTGTTTTTTCACTTGCAAGCAAAATTTCTCCTAGTGTTATTTTCGTGGATGAGgtta---------gtgattttcttaacggtcactgatgatatgcctatgacataataagttgtagcttactcattgatttgtgtcctgtatattag------

upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 5'ss of exon 22
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgt-tgctttattatgtcatttg----tttatcttcctttgaatttttcttttcctttattttaaatattttttttaaaactttttacccttcatatgagccattt--
||||||||||| |||||||| || || ||||| ||||| ||  | || ||||| ||||| |||||||| ||||||||||| ||||| || || |  || | |        | | | |||  |   |  |||     |  |  |||||  || ||| |    | ||  | |   |  | |      |||   
TGGTTTGGTGAGGGAGAGAAGTACGTTAAAGCTGTCTTCTCCTTAGCGAGCAAGATTGCGCCAAGTGTCATTTTTGTTGATGAGgtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctc--gatctgatgattgtggaaaatcattattcag

upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 22
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttattatgtc-----atttgtttat--cttcctttgaatttttcttttcctttattttaa----atattttttttaa----aacttttta-cccttcatatgagccattt-------------------------------------------------------------------
|||||||| ||||||||||||||||||||||| || || ||||| || || |||||||| || |||||| ||||||||||||||||   || | ||  ||     |||  |  |   |||    |  | | ||| |  |  || || |      ||   |||  | |    |||| || |  ||||   ||  ||||||                                                                    
TGGTTTGGGGAAGGAGAGAAATATGTCAAAGCTGTGTTCTCTCTAGCTAGTAAAATTGCACCTAGTGTTGTTTTTGTTGACGAGgtaagttgaataaatctttaaattcatccacaacttttgctataatgttcctcactctttttatgggtccatggatttagtgacggtaactgttcaatccttttaattcgccattctgatctttagtttctttcttcttttcctgttaaaaaatttattgttaacttagatttattgtttcag

upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: EFJ34631 (Selaginella moellendorffii), 5'ss of exon 12
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttattatgtcatttgtttatcttcctttgaatttttcttttcctttattttaaatattttttttaaaactttttacccttcatatgagccattt
||||||||||| |  |||||||||||||| ||||| ||| || |||||||||||||  | ||||| ||  | ||  ||||||||||   |  | |  |   ||||||    ||  | |   ||| |||                                                        
TGGTTTGGTGAGGCGGAGAAATATGTCAAGGCAGTATTTACTTTGGCCAGCAAAATCTCGCCAAGCGTGGTGTTCATTGACGAGgta--tgcaatcggatgtttgttacatttgatgtatgtttctctacag----------------------------------------------------

upper sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 18
lower sequence: EFJ31084 (Selaginella moellendorffii), 5'ss of exon 10
TGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttattatgtcatttgtttatcttcctttgaatttttcttttcctttattttaaatattttttttaaaactttttacccttcatatgagccattt
||||||||||| |  |||||||||||||| ||||| ||| || |||||||||||||  | ||||| ||  | || |||||||||||   |  | |  |   ||||||    ||  | |   ||| |||                                                        
TGGTTTGGTGAGGCGGAGAAATATGTCAAGGCAGTATTTACTTTGGCCAGCAAAATCTCACCAAGCGTGGTGTTCGTTGACGAGgta--tgcaatcggatgtttgttacatttgatgtatgtttctctacag----------------------------------------------------