1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AAAAGCAGTTCACCTTGACTCAATTCCATTTGACATGGAACGTGACCTTATCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttgtcaaattctctggattgcatttcacttcatattgaatagaataggtcttgaagtggataacctttataaatggaatgttatttcccctcc...
species | Glycine max |
transcript | GLYMA01G43470.2 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TCACTCCAACATACA-GA-GA-GAGGCCACAGTTGCTTAAATACTATCAG GATGCCATTGACAEST: gi|151396024|gb|EV265901.1|EV265901
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACA
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACEST: gi|19270925|gb|BM887181.1|BM887181
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACEST: gi|23733236|gb|BU764804.1|BU764804
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACEST: gi|51342594|gb|CO983564.1|CO983564
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCTTGAGANEST: gi|11275038|gb|BF325362.1|BF325362
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCC
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGCAGTTCACCTTGACTCAATTCCATTTGACATGGAACGTGACCTTATCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttgtcaaattctctggattgcatttcacttcatattgaatagaataggtcttgaagtggataacctttataaatggaatgttatttcccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG