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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttctagtactctgcatcttgaagtagtagagcatagtatatgaattatttgatgtaactggttgagaatattagctcttaattggcgtactgtcttttgctttatag

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 5'ss of exon 17
GGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgtt------atttctagt---actctgcatcttgaagtagtagagcatagtatatgaattatttgatgtaactggttgagaatattagctctta-attggcgtactgtcttttgctttatag
||||| |||||| | || |  ||||||||||| |||||||||||||| ||||| |||||         | ||| |   | |||  |  ||    |  || |||| ||  | | || ||  | |  | |||  || ||   |   ||    |  ||                        
GGAAGAGAGATATTGCAAAACACTGTTGATCTGGTTCAGAATAACTTAAATTTGGAGgtacggagagctgctaatttaattctataattttctctgata-agca-agcttctaaaatacct-acatgactttttaaggggacatgcagccatgttaatac-------------------

upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 16
GGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttctagtactctgcatcttgaagtagtagagcatagtatatgaattatttgatgta---actggttgagaatat-tagctcttaattggcgtactgtcttttgctttatag
|||||||||||  | ||||||||||||||||| |||||||||||  | || || ||||||        ||   || || ||||   | |  |   | || | | || | |||| ||||   ||||||| |    |  | ||| |||   |    | |||||| |    |  ||
GGAAGGGAGATTTTGCAGAGTACTGTTGATCTCGTTCAGAATAATCTAAACTTGGAGgttt------atatcttgtatattgag--aatccaaatttgt-tgttaactttttgctgtattaactggttcaagtaacgtggctgtta---gatccattgtcttgtatcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395403|gb|EV265280.1|EV265280
EST:     AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG                         GTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
genomic: AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttcta ... tgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
EST: gi|193488012|gb|FK453161.1|FK453161
EST:     AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG                         GTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
genomic: AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttcta ... tgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
EST: gi|208161268|gb|GD963442.1|GD963442
EST:     AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG                         GTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA
genomic: AGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGgttatttcta ... tgctttatagGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAA