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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 18
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag
||||| || || || || || ||||| |||||||| |||||||| ||||||||||||||||||||||   ||       || || | |   | | ||   | | ||| |||   |   |   ||  |||    | |  |||||     |      
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgttt--gttat-----cttaagttatgctttgttgcctgtctat-tattactggctggggtggtctatttacaccattattgaacag-----

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 18
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag
||||| || || || || || ||||| |||||||| |||||||| ||||||||||||||||||||||   ||       || || | |   | | ||   | | ||| |||   |   |   ||  ||     | |  |||||     |      
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgttt--gttat-----cttaagttatgctttgttgcctgtctat-tattactggctggggtggtccatttacaccattattgaacag-----

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag
|||||| | ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||   | |    || |||  |       | || |  | || ||| | |   | | |||| |  | ||||  |  ||  |  |        
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgttt--gtgg----tgttcagtta------tgttcttgaaatgtatctgttgttttcttgtttattaacaacttccttgcacag--------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag-----------
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  |  |   | || |   | || ||| | |   |    ||  | |   |  |   |||  |   || |   ||  ||  |           
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttta-gatatctttttttatgttt---tgcccattaaaaacttccttggacag-acacttgttgagttctttggaacattgtcga

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  |  |   | || |   | || |  || | | |    ||  | |   |  |   |||                      
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttca-gatatcttttttttaatgttt-tgcccattaacaacttccttggacag---------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||        |  ||||||||     |  ||   | | | ||| |  || ||  |||| | |||| || |||||       | ||||||||
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgtt--------agatgctcaaagtgttacataacttgt-tctatttgaatgta-gtatttttttctaactatatgg------tatatttcag