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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGgtaattattgaatttcgttattgaaatagtgctcaatatatgttttttctactgattcctcttttttgtgctttctcattggacag

Basic information

species Glycine max
transcript GLYMA01G36870.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 18
lower sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 18
AGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGgtaattattga--atttcgttattgaaatagtgctcaatatatgttttttctact--gattcctcttttttgtgctttctcattggacag
 || ||| | || ||  | ||  | ||||| || ||||| || |||||||| || ||||||||||| || || ||||| ||||| |||||||| || |||||| ||  | |  || |  | |||    |  | |   ||  |  || | ||| ||   |  |              || |  |    |||
GGCCCAGGTGACTGCGTTACAACTTATAATTGGAACTCTGCAGAGGATGCAAGTATTTGGTGTTGAGAATAGAGATACATTAACGCACAAGGCTACGGGGgtatttcatcatgatatgataattagtctcttaccatattca-attgtctctgcttaaaggctgacaagggaaaacttatactcttgcag

upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 18
lower sequence: AT3G51310.1 (Arabidopsis thaliana), 5'ss of exon 18
AGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGgtaattattgaatttcgtta-ttgaaatagtgctcaatatatgttttttctactgattcctcttttttgtgctttctcattggacag
 |||||  | |||||  | | ||||||||||||||| || || |||||||  || |||  |||||| ||||| |||||| | ||||||||||| |||||||||  | |           | ||||   ||||     || |     |   |||| |     ||   || || | |   |        
GGCACAAGTAACAGCACTACGTTTAATAATAGGGACACTCCAGAGGATGCGTGTATTTAATGTTGAGAACAGAGATACTCTGACTCACAAGGCGACAGGGgtatctttcctgacaaaccagttgagtaagtgtgtgctaca----ctgaatactaacaaggctaaattatgttgttgtag-------

upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 19
AGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGgtaat--tattgaatttcgttattgaaatagtgctcaatatatgttttttctactgattcctcttttttgtgctttctcattggacag
||||||| | || ||| | ||  ||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||  || |  | ||   | |    |||   | || |  |   | | ||| ||||  ||    |||   |||||    |||  |||
AGCACAGGTGACTGCTCTACACCTAATAGTAGGGACTCTTCAGAGGATGCATGTCTTTGGTGTTGAGAACAGGGATACCTTAACACACAAGGCCACAGGGgtaatattagtagaattgcatctctttataaaac-cagttcagcctgtctctgctgaaaccctgatttgaagcttttattttgagcag

upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S456_14V6.1 (Physcomitrella patens), 5'ss of exon 19
AGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGgtaa--ttattgaatttcgttattgaaatagtgct-caatatatgttttttctactgattcctcttttttgtgctttctcattggacag-----------
||||||  | || ||| | ||| | ||||| |||||  | |||||||  |  || |||||||| || ||||| |||||||| || |||||||||||||||||||  || |  | |     || ||||  || | | | ||   |   |  | | ||| |             |   |   |     | |           
AGCACAAGTTACTGCTCTTCATCTCATAATTGGGACGTTGCAAAGGACACGAGTTTTTGGTGTGGAGAACAGAGATACTTTGACCCACAAGGCCACAGGGgtaagtttttctactgagactaatgaataagggttgccattctttcataatgtgctgctggaaaccacaatcgagatacgaagcagcggttttctttatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669361|gb|BE190468.1|BE190468
EST:     GAAAACAGGGATACTTTAACTCACAAGGCCACAGGG                         TATTCAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCA
genomic: GAAAACAGGGATACTTTAACTCACAAGGCCACAGGGgtaattattg ... cattggacagTATTCAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCA