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GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagacacagaccatataatttactttgtttttatgcatccttaattttatttttactttattaatatattcgctttaaggaaattaaatccagaatgtatagttgacttcttcaagtgtttaaatcgttttaatcgtgttactttatcatcacttcag
species | Glycine max |
transcript | GLYMA01G00430.2 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|31459603|gb|CD401631.1|CD401631
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|208269821|gb|GE069513.1|GE069513
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTCGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|11689289|gb|BF596965.1|BF596965
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|42723073|gb|CK768972.1|CK768972
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|208185537|gb|GD982050.1|GD982050
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAEST: gi|51344264|gb|CO984997.1|CO984997
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGA
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|193612634|gb|FK565451.1|FK565451
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|193710694|gb|FK644652.1|FK644652
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCGGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|193391350|gb|FK355031.1|FK355031
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: TGCATACTTGATAAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGEST: gi|10253317|gb|BE821083.1|BE821083
genomic: TGCATACTTGATAAA-TTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGG
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATACEST: gi|7326817|gb|AW620615.1|AW620615
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTNTCCGCAGCAT GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGGATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagacacagaccatataatttactttgtttttatgcatccttaattttatttttactttattaatatattcgctttaaggaaattaaatccagaatgtatagttgacttcttcaagtgtttaaatcgttttaatcgtgttactttatcatcacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA