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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagacacagaccatataatttactttgtttttatgcatccttaattttatttttactttattaatatattcgctttaaggaaattaaatccagaatgtatagttgacttcttcaagtgtttaaatcgttttaatcgtgttactttatcatcacttcag

Basic information

species Glycine max
transcript GLYMA01G00430.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193386641|gb|FK352030.1|FK352030
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|31459603|gb|CD401631.1|CD401631
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|208269821|gb|GE069513.1|GE069513
EST:     CTGCATACTCGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|11689289|gb|BF596965.1|BF596965
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|42723073|gb|CK768972.1|CK768972
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|208185537|gb|GD982050.1|GD982050
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGA
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGA
EST: gi|51344264|gb|CO984997.1|CO984997
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|193612634|gb|FK565451.1|FK565451
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|193710694|gb|FK644652.1|FK644652
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCGGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|193391350|gb|FK355031.1|FK355031
EST:     TGCATACTTGATAAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGG
genomic: TGCATACTTGATAAA-TTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGG
EST: gi|10253317|gb|BE821083.1|BE821083
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC
EST: gi|7326817|gb|AW620615.1|AW620615
EST:     CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTNTCCGCAGCAT                         GAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGGATAC
genomic: CTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagac ... atcacttcagGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCCGCATAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAGgtacgaagacacagaccatataatttactttgtttttatgcatccttaattttatttttactttattaatatattcgctttaaggaaattaaatccagaatgtatagttgacttcttcaagtgtttaaatcgttttaatcgtgttactttatcatcacttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA