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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTTACTGGTTTCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgtttaatttatgatgaaagatctataatgcatgttatacactttcataacaaaatttttagtgggttgaactgtacctccgttgaattggtt...

Basic information

species Glycine max
transcript GLYMA20G28970.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 14
AGATTTACTGGTTTCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgtttaatttatgatgaaagatctataatgcat------gttatacactttcataacaaaatttttagtg--ggttga-actgtacctccgttgaattggtt
 ||| |  ||||||||||| | ||||| ||||| || ||||||||| | |||||||||||||||||| ||   ||  |  ||||||       |  |||  ||      |||  |    | | |    | ||| ||  ||  | |||| |  || |||  | | |       
GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcacta--ctttgtccatgatgcttatcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205882|gb|BU965135.1|BU965135
EST:     TCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAG                         GGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGA
genomic: TCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgt ... atttgaacagGGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGA
EST: gi|19347375|gb|BM892255.1|BM892255
EST:     TCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAG                         GGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGA
genomic: TCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgt ... atttgaacagGGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGA