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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgtttgtgttcttttctgcagtatactgttctgacttaattagctaagacttgttgattttgtcttgtaag

Basic information

species Glycine max
transcript GLYMA20G25120.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 17
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 17
TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgtt-tgtgttcttttctgcagtatactgttctgacttaattagctaagacttgttgattttgtcttgtaag
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TGATAGTAGTATGATACGTTTGGACCGCCTTGAGTTTCATATAAGAGAAGAACTAAACAAAACAGCACCTCGCATGATGGTTGTGCTACATCCACTTAAGgtgcatctctcatttgaagttgtgttcacta-atcatttta--ttagtgctcaacggattctttctctggttccag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389687|gb|CA852894.1|CA852894
EST:     AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG                         GTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAG
genomic: AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAG
EST: gi|14999379|gb|BI320344.1|BI320344
EST:     AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG                         GTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAG
genomic: AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAG
EST: gi|151409608|gb|EV279416.1|EV279416
EST:     AATTGAACAAAACAGCACCTCGTGCAATGGT-GTCCTACATCCACTCAAG                         -TTGTCATTACTA-TCT-GAAAC-A-CTCAGCA-TTGAG-T-GATGCAA
genomic: AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAA
EST: gi|5753691|gb|AI960978.1|AI960978
EST:     AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG                         GTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAG
genomic: AATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAGgtatatttgt ... gtcttgtaagGTTGTCATTACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAG