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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAAGCTTTTTGAAGAATCAAAGAAGCTTGAAGACTATGCATCACAGGCTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcataacattaacatgtatggttcgaaagatggttatgattgctgacatctgatgtggacatgctattctattctgtacag

Basic information

species Glycine max
transcript GLYMA19G38150.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193537824|gb|FK494145.1|FK494145
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACGATCAATATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193416640|gb|FK384110.1|FK384110
EST:     TGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTG
genomic: TGACCAAATGCAATTGAAGAGCATTGATGAGTTT-AAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193316220|gb|FK279808.1|FK279808
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|207840345|gb|GD811364.1|GD811364
EST:     GAGTTTAAGAAAGCATTACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTT
genomic: GAGTTTAAGAAAGCA-TACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTT
EST: gi|193497690|gb|FK460866.1|FK460866
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|207686764|gb|GD668346.1|GD668346
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|208240446|gb|GE041404.1|GE041404
EST:     CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193437712|gb|FK399603.1|FK399603
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAG-TTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193700595|gb|FK635098.1|FK635098
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|208288941|gb|GE081398.1|GE081398
EST:     CAATTGAAGAGCATTGATGAGCTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|208218363|gb|GE020091.1|GE020091
EST:     GATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: GATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193646572|gb|FK587417.1|FK587417
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193677453|gb|FK619667.1|FK619667
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|6964169|gb|AW432862.1|AW432862
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTGTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193643737|gb|FK586934.1|FK586934
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193566322|gb|FK524125.1|FK524125
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACGATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193381627|gb|FK347064.1|FK347064
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|208042250|gb|GD839528.1|GD839528
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|208268929|gb|GE068580.1|GE068580
EST:     ATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACGATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: ATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193377008|gb|FK342645.1|FK342645
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|207778024|gb|GD747957.1|GD747957
EST:     CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193723465|gb|FK657145.1|FK657145
EST:     GCATTGATGAGTTTAAGAAAAGCATAC-AG                         GAACAATCAAAATCTGATACAGAGAAACTTAATTGCCAATATGACTAGTTT
genomic: GCATTGATGAGTTTAAG-AAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTT-ATTGCCAATATGACTAGTTT
EST: gi|208170721|gb|GD972756.1|GD972756
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193543933|gb|FK499346.1|FK499346
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193672544|gb|FK617220.1|FK617220
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193495922|gb|FK461918.1|FK461918
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACGATCAATATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193334713|gb|FK300533.1|FK300533
EST:     GACCAAATGCAGTTTGTAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: GACCAAATGCA-ATTG-AAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193550283|gb|FK509182.1|FK509182
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193607740|gb|FK557507.1|FK557507
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193696348|gb|FK636612.1|FK636612
EST:     CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|207820076|gb|GD789982.1|GD789982
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACT
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACT
EST: gi|208125930|gb|GD925986.1|GD925986
EST:     CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193395720|gb|FK364023.1|FK364023
EST:     CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|207809932|gb|GD781922.1|GD781922
EST:     CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: CTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|193554741|gb|FK513884.1|FK513884
EST:     AGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: AGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
EST: gi|207709965|gb|GD690649.1|GD690649
EST:     ATGAGTTTAAGAAAGCATACGAG                         GAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA
genomic: ATGAGTTTAAGAAAGCATACGAGgttatatcat ... ttctgtacagGAACAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATAAGCTTTTTGAAGAATCAAAGAAGCTTGAAGACTATGCATCACAGGCTGACCAAATGCAATTGAAGAGCATTGATGAGTTTAAGAAAGCATACGAGgttatatcataacattaacatgtatggttcgaaagatggttatgattgctgacatctgatgtggacatgctattctattctgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA