Sequence
atgc intronic sequence ATGC exonic sequenceAGAGTCTGATGACATACATGCTGCTTTGGCACTAATGTATGGATATGCTGCAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTTgtaggtcatcttttttctctgcttttgactcggtagttatacaacaatctttactttgttgtgttgctttatttcttaccagataccaagggaataaaaa...
Basic information
species | Glycine max |
transcript | GLYMA19G37090.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G37090.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 5'ss of exon 5
AGAGTCTGATGACATACATGCTGCTTTGGCACTAATGTATGGATATGCTGCAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTTgtaggtcatcttttttc--tctgcttttgactcggtagttatacaacaatctttactttgttgtgttgctttatttcttaccagataccaagggaataaaaa
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GGATGTTGATGACACATATGCAGCCCTGGCATTGATGTATGGATATGCTGCAAAATATGCTCCATCAACAGTTATTGAAGCCAGGATCAATGCACTTGTGgtatgctgtctaattccaatctatcaacaaacttgtttctgatctgttaccttaacacgacaacatga--tgagtgattattacatattcccattaaagatg
upper sequence: GLYMA19G37090.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G439049_T01 (Zea mays), 5'ss of exon 9
AGAGTCTGATGACATACATGCTGCTTTGGCACTAATGTATGGATATGCTGCAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTTgtaggtcatcttttttctctgcttttgactcggtagttatacaacaatctttactttgttgtgttgctttatttcttaccagata--ccaagggaataaaaa
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AGATGTTGATGACACATATGCAGCATTGGCGTTGATGTATGGTTATGCCGCAAGATATGCTCCATCAACTGTTATTGAAGCCAGAATTAATGCACTTGTGgtatgatatcccatttacaaactaact-tttgtttcttacatgaacaattccgatgaataataatatgtgtatgcatttgagacaaactcttgcactccat-
upper sequence: GLYMA19G37090.1 (Glycine max), 5'ss of exon 17
lower sequence: AT2G36810.1 (Arabidopsis thaliana), 5'ss of exon 26
AGAGTCTGATGACATACATGCTGCTTTGGCACTAATGTATGGATATGCTGCAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTTgta-ggtcatcttttttctctgcttttgactcggtagttatacaacaatctttactttgttgtgttgctttatttcttaccagataccaagggaataaaaa
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AGACAGTGATGATATACACGCTGCTTTGGCTTTGATGTATGGATATGCTGCAAAATATGCACCCTCATCAGTTATTGAAGCCAGAATAGATGCACTTGTCgtatgattctaaaccttcaaatgaatcgcatttctaattagattataatcttccatcctgcttctttttctataatctgttataaacttatgcgtcagat-
upper sequence: GLYMA19G37090.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv08s0007g04630.t01 (Vitis vinifera), 5'ss of exon 30
AGAGTCTGATGACATACATGCTGCTTTGGCACTAATGTATGGATATGCTGCAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTTgtaggtcatctttt----ttctctgcttttga--ctcggtagttat--acaacaatctttactttgttg-tgtt-gctttatttcttaccagataccaagggaataaaaa
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AGAATCTGATGATATACATGCTGCTTTGGCACTAATGTATGGGTATGCAGCAAGATATGCTCCATCAACTGTTATTGAAGCCAGAATAGATGCACTTGTGgtataatatatcatctaattatctttttctaaatctttgtggttatttgtattgcccctttcttgattgctgtcagctttatttttgatattattttttg----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298176794|gb|HO023267.1|HO023267EST: CAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTT GGCACCAACATGCTCTCTCGGCTTCTTCATGTGCGTCTCCCCAAAGCAAAG
genomic: CAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTTgtaggtcatc ... taatgggcagGGCACCAACATGCTCTCTCGGCTTCTTCATGTGCGTCTCCCCAAAGCAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGTCTGATGACATACATGCTGCTTTGGCACTAATGTATGGATATGCTGCAAAGTATGCCCCATCAACAGTTATTGAAGCCAGAATAAATGCCCTTGTTgtaggtcatcttttttctctgcttttgactcggtagttatacaacaatctttactttgttgtgttgctttatttcttaccagataccaagggaataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataaa