Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGgttctatctattactcccctctcatgcctcctttttttttgcttatatttttggatactaatacctaattaactttccacaacagaactaaagtctgaatattttgctttgcag
Basic information
species | Glycine max |
transcript | GLYMA19G34580.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 5'ss of exon 17
GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGgttctatctattactcccctctcatgcctcctttttttttgcttatatttttggatactaatacctaattaactttccacaacagaactaaagtctgaatattttgctttgcag
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GTTCAAGGTTGACCAATTATGTTGGAATACTTAGTCAAGGACTAAGAATAGCACCTCCTGAGGCTCCCGTGACAGGCTATATGgtttgctct-ttgttcacttcataaa--------tggttcaactgtagcactgg---caaaagattggttgaattt---------gattaagctattttcctttcaatcaacag
upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM5G831712_T02 (Zea mays), 5'ss of exon 17
GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGgttctatctattactcccctctcatgcctcctttttttttgcttatatttttggatactaatacctaattaactttccacaacagaactaaagtctgaatattttgctttgcag
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GTTCAAGGTTGACGAATTTTGTGGGAATTCTTAGTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATGgttcgttgta--attcactatttgtttcaagtgtagcatcagtcaaagtgttggttgaaaacaattatgtgatgatgctcctcgtttctttgacag------------------
upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 17
GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGgttctatctattactcccctctcatgcctcctttttttttgcttatatttttggatactaatacct--aattaactttc-cacaacagaactaaagtctgaatattttgctttgcag---------------
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GTTCCCGGTTGACAAACTTTGTGGGTATACTTAGTCAAGGACTGAGAATAGCTCCTCCTGAAGCTCCAGCAACTGGCTATATGgtctttctctctctccctctttcat---tttgtacacagatcataagtcattcaatcttctttactgtagttcattttcattttaaaacacacaaacatactcattaatcattgcaatcttatttattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398054|gb|EV267932.1|EV267932EST: GCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATG TTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTAT
genomic: GCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGgttctatcta ... tgctttgcagTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGgttctatctattactcccctctcatgcctcctttttttttgcttatatttttggatactaatacctaattaactttccacaacagaactaaagtctgaatattttgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC