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TGGACTGGAACCAAACTCATTGCAGTTATCTGGGTCAACAAAGACTGTGCTTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaagcttcactctttccaaacttctcgtttataattgagctaatttgttcatccccatgttttgatacacccttctgaatattatttagtttat...
species | Glycine max |
transcript | GLYMA19G30450.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|23733336|gb|BU764862.1|BU764862
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|207819161|gb|GD789865.1|GD789865
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|14125862|gb|BG790300.1|BG790300
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|23725399|gb|BU760653.1|BU760653
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGCCEST: gi|6227863|gb|AW156462.1|AW156462
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|10253908|gb|BE821723.1|BE821723
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|15285857|gb|BI469748.1|BI469748
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|13312086|gb|BG405737.1|BG405737
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATTTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GGGGTGCCAATCCCAAGTCTACCTCAGAATGTTGAGAAGGEST: gi|14125033|gb|BG789471.1|BG789471
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGG
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|207782185|gb|GD753756.1|GD753756
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCEST: gi|21888837|gb|BQ742050.1|BQ742050
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAACGACATGAATGTCEST: gi|15285949|gb|BI469840.1|BI469840
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
EST: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAG GTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
genomic: TTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaag ... atggtttcagGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACTGGAACCAAACTCATTGCAGTTATCTGGGTCAACAAAGACTGTGCTTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGgtacctcaagcttcactctttccaaacttctcgtttataattgagctaatttgttcatccccatgttttgatacacccttctgaatattatttagtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcccc