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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAggtgaattccctttctactctgggtgtgttgtgtagaaaaagaaactctggcaattttcttatgacccattaagaatgctgttaacttgagttctgtttcattttctgca

Basic information

species Glycine max
transcript GLYMA18G16990.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 24
CGATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAggtgaattccctttctactctgggtgtgttgtgtagaaaaagaaactctggcaattttcttatgacccattaagaatgctgttaacttgagttctgtttcattttctgca-----
  || || || ||||| ||||| |||||||  ||||| || ||||| |||||||| || |||||||||||||||||  |||  |||||||||||||| || |||| |    ||| ||  |    | | |||| |            |||   | |||| || |       |   | |  |||  |    | ||   | ||| ||  | ||     
-TATTACGAGGTGGCATTATATAAGTGTTGCAGGAAGCATTTTAGCATGGTTTATATTCATTTTTATATATTCAGGTGTTATGACTCCTTATGATCGGCAAgtgagtga--tttttaaaccatttcttttgttt-----------ttcttttagttttgttttatgtttatctaactagtgtatatgctaatttcttctcaattcatacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718811|gb|BW672012.1|BW672012
EST:     TTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCA                         GAAGA-T-TT-ATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTA
genomic: TTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAggtgaattcc ... attttctgcaGGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTA
EST: gi|13788868|gb|BG651459.1|BG651459
EST:     TTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCA                         GGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTA
genomic: TTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAggtgaattcc ... attttctgcaGGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTA
EST: gi|209721767|gb|BW666387.1|BW666387
EST:     TTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCA                         GAAGA-T-TT-ATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTA
genomic: TTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAggtgaattcc ... attttctgcaGGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTA