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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcag

Basic information

species Glycine max
transcript GLYMA18G06770.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os05g07130.2 (Oryza sativa), 5'ss of exon 15
GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagct----aattaactagtttttctatattgacccatacat-------ttctatgaacc--taaatttatgttctgcag--------------------
|| || |||||||||||||| || |||||  | |||||||||||||||||| ||| ||   |   |  || | | | |  | ||   ||  ||    |||   || |     |  |||||   |||  ||| ||   ||   ||       || ||   ||   |  ||| ||||    ||                     
GTCAACAATATCAGTGGTTATCTCCCTGGAAGGATTGTCTTTTTCTTGgtatgtacttcaaattca-ataatcagaaaatacaagaaataaatagcagaatgcagttctatgagaaactataattttgataatgggtcaatgataaagagcttttaattactagtgcattgatgtgacacatttctcaacatttaactgcag

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 15
GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagtatttttgaaggatgtagttaaata--ccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcag
||||| ||||| |||||||||||||||||  ||||||| ||||||||||||   || |   |   |   | |||||||  |   | | | |   || |   |    |  |  |   |||  | | |  |     | | |      ||  |                     
GTGAACAATATTAGTGGTTACCTTCCTGGGAGAATTGTATTTTTCTTGgtacaaatctgctat--acagaattaaataggctctatctcgtacttgtttctatattgacatgtctttagcctatttgcaacatgcaaaatcagcttacaa---------------------

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 15
GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcag
|| || ||||||||||| || |||||||| || ||||| |||||||||||| || |    |     | | || | |      ||       ||| |   |||   | | ||   || ||||    | ||   | ||  |  | | | ||      | | | ||||    
GTCAACAATATCAGTGGCTATCTTCCTGGGCGGATTGTGTTTTTCTTGgtatgt-tgccaggcaactctcgtgaga------aatgtggttatgtttacactt--ccattt--ttatttttatcctgtta--caatgtagctttgtaaat-----tgtgtattctt---

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 17
lower sequence: PP1S414_24V6.1 (Physcomitrella patens), 5'ss of exon 15
GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagtatttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttctatattgacccatacatttctatgaacctaaatttatgttctgcag
|||| |||||| ||||| |||||||| ||||| || || ||||||||||||||   | |    || |   ||   ||  ||| |  |||  |    |        | |   |    |     |   |   |    |       ||| |||  || | |||||  || ||
GTGAGTAATATTAGTGGATACCTTCCGGGCCGTATCGTGTTTTTCTTGgtaagagatctccttggcta-ggtc--atttcaataatcata-acatcgttgtagtccaagccatacggagccgcagaagctatgtctttgagattattaac--aagtgtatgtg-tgtag

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 17
lower sequence: PP1S215_89V6.1 (Physcomitrella patens), 5'ss of exon 16
GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagt-----------atttttgaaggatgtagttaaataccaaaacccatggatgctggaactaagctaattaactagtttttcta----tattgacccatacatttctatgaacctaaattta---tgttctgcag
||||| |  || ||||||||||||||||| |||||||| |||||  ||||||||           |  |||    ||| |  ||  | | | || |     | || | |     |||||  |    ||| |||||     ||||| |   | || |||     |   || ||||   | ||||||||
GTGAACAGCATTAGTGGTTACCTTCCTGGTCGAATTGTGTTTTTTCTGgtaagttcagcgtggcgaacttttgctgatttttttgtacaactaatcaagctgctgttagcttccagctagctttacagtgtttctggaggtattggcttcttcacttcatcatattgaagtttaacatattctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964344|gb|BM271080.1|BM271080
EST:     GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTG                         GTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAA
genomic: GTGAATAATATCAGTGGTTACCTTCCTGGCCGAATTGTCTTTTTCTTGgtaagtattt ... tgttctgcagGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAA