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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatccattgcttttataatttatctattgtaacattatgctagtttttaaattcttagtcattgttcaattcttgcag

Basic information

species Glycine max
transcript GLYMA18G02960.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgt-gtgatccattgc-ttttataatttatctattgtaacattatgctagtttttaaattcttagtcattgttcaattcttgcag
||||||||||| || |||||||| || ||||| || || ||||| ||||| ||||||||||||||||||  |  |   ||    ||| |    | |||||| | ||    ||      | ||  | |    | ||||  ||          
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtctatttacaccattattgaacag---------

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgt-gtgatccattgc-ttttataatttatctattgtaacattatgctagtttttaaattcttagtcattgttcaattcttgcag
||||||||||| || |||||||| || ||||| || || ||||| ||||| ||||||||||||||||||  |  |   ||    ||| |    | |||||| | ||    ||      |  |  | |    | ||||  ||          
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtccatttacaccattattgaacag---------

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatccatt---gcttttataatttatctattgtaacattatgctagtttttaaattcttagtcattgttcaattcttgcag
|||||  |||||||||| ||||| || ||||| ||||||||||| ||||| |||||||| ||||||||||   | || |   | | ||  ||| ||||| ||||    |  || |  ||   || ||| | | ||  |              
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtgttcagttatgttcttgaaatgtatctgttgt--tttcttgtttattaacaacttccttg-cacag--------------

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatcca-ttgcttttataatttatctattgtaacattatgctagtttttaaattctt-----agtca-ttgttcaattcttgcag----------
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||||||||    | || ||  ||||| |   ||||| || | |  || |||   ||   || ||| |     || || ||||| | |||||              
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttaga---tatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatccattgcttttataatttatctattgtaacattatgctagtttttaaattc-ttagtcattgttcaattcttgcag
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||||||||    | || |  ||||   || | | | || |||  || |||   ||   || ||| || | ||                 
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacag----------------

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatccattgcttttataatttatctattgtaacattatgctagtttttaaattcttagtcattgttcaattcttgcag
|||||| ||||||| || ||||| |||||||| ||||| || |||||||| |||||||||||||| |      |  | |  ||   |   ||    |      |  | | | ||||  | |||       |  |  |||| | ||||||
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaatt--gttggttgctaaacaactcgatgttcaagttgctgaatatcc---ctctactcaaat-ttgcag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatccattgcttttataatttatct--attgtaacattatgctagtttttaaattcttagtcattgttcaattct---tgcag
|||||| ||||||| || |||||||||||||| |||||||| |||||||| || |||||||||||           | ||| | |  ||| ||| |   |||| | |       |||  | || || ||    |    ||   ||    |||||
CATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAGgt-----------agtgcctctgaaatatattttggttgttaaacctactaagtggtcaagttgttgcataacactctgctccatatgcag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatcca-ttgcttttataatttatctattgtaacattatgctagtttttaaattcttagtcattgttcaattcttgcag
||||| || |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| | |  | ||  ||  ||| |   ||  |||  |      ||  || | | || ||| | | ||  |  ||||          
CATTATACTGAGTTGCCAGATATAAAACGCGTCATTGTGAATACACATGCAATTGAGCCACAGgtttttatacttcaactgtgtttcttggttcactag-gaggttgtaaacttgctattgaatacgtggttctc-ttcag---------