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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGAgtaggtgactagcaccatgaagaagactccttaatgcgtttggaaaattgaattgctaacctgattcatataattggaaatctttttgcag

Basic information

species Glycine max
transcript GLYMA17G36540.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 17
AACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGAgtaggtgactagcaccatgaagaagactccttaatgcgttt-----ggaaaattgaattg-----ctaacctgattcatataattggaaatctt--tttgcag
 |||||||| || || || ||||||||||||||||| ||||||||||| ||     | |||| |||| |||||||  | ||||| |  ||||||| | | ||  ||| |         | |   |   |  || |   | |     | | |  |  || |     |||  || ||| || |  |   || | |   ||| |||
TACAGAACGATACCTGTCCGGTCAGAAAGCTGATGCTGCAGGATTTGTTCGCAGACTACTTCATGACTTGGAGTCAAGAATATCAACACAGTTCAGCAGGgttagtgccctcagttcaggatgtgctgctatattatatctatgtagaagagatccatagtctatctactctcattaatgtcgtcttaattttccatttccag

upper sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 17
AACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGAgtaggtgactagcaccatgaagaag-actccttaatgcgtttggaaaattgaattgctaacctgattcatataattgg-aaatctttttgcag
 |||||||| ||| | |||||||||||||||||||||||||||||||||||    ||||||  ||| ||||||||  | || ||||||||||||  ||| ||| ||   |  |     |  |||  | |   |      ||| |         |||  |   | |    | |||      |||  | ||||||
TACAGAACGGTATATTTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCCTCTTGCTTGATGATCTGGAGTCAAGAATTTCTATGCAGTTCGGCCGTgtaagtttttgtctttgagctgaaacaatatatggctatttttgttctccaggttgtgatatttaccagtctaagcaatgaattatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193521270|gb|FK478561.1|FK478561
EST:     GTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGA                         TTTGTTGACGAAGCTTGCCATCAAATTGAAAGAAATGAGCGCAATGTTCGC
genomic: GTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGAgtaggtgact ... ctttttgcagTTTGTTGACGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGC
EST: gi|193650973|gb|FK597580.1|FK597580
EST:     GTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGA                         TTTGTTGACGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGCTCGC
genomic: GTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGAgtaggtgact ... ctttttgcagTTTGTTGACGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGC
EST: gi|192294049|gb|FG987218.1|FG987218
EST:     GTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGA                         TTTGTTGACGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGC
genomic: GTGATTTGCTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGAgtaggtgact ... ctttttgcagTTTGTTGACGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGC