Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaattaagttgatacaatttccgcacataaaatgtatttaattttatgaaaatttaacggggaggatgtaaaactactgctgaacaatcttctttt...

Basic information

species Glycine max
transcript GLYMA17G14450.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644472|gb|FK589938.1|FK589938
EST:     CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: gi|193419802|gb|FK382430.1|FK382430
EST:     CACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAAGCAAAAATGAATTATCAAAACTGGACTATCC
genomic: CACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTT-AGCAAAAATGAATTATCAAAACTGGACTATCC
EST: gi|58014859|gb|CX701601.1|CX701601
EST:     CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: gi|254340092|gb|GR858217.1|GR858217
EST:     CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: gi|254321303|gb|GR824620.1|GR824620
EST:     CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: gi|208325196|gb|GE123596.1|GE123596
EST:     GGCAGTTATCACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: GGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: gi|208217969|gb|GE018283.1|GE018283
EST:     CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
EST: gi|308098914|gb|HO760755.1|HO760755
EST:     CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG                         GAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT
genomic: CTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaatta ... tattattcagGAACTCATCGAAAAAGTTAGCAAAAATGAATTATCAAAACTGGACTATCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAGgtacaaattaagttgatacaatttccgcacataaaatgtatttaattttatgaaaatttaacggggaggatgtaaaactactgctgaacaatcttctttt

- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggagg