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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTGGTACAGGAACTATCAACCTCTGAAAATGATGGGCCTATATCAGAAACTTTCTGCAAGgtataagcgtcatgccttaaacactattgtcttttcttttcttaaattgcccttgtttattttcattgcttcaagtttcatatatatatatatatatata...

Basic information

species Glycine max
transcript GLYMA17G08230.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 17
lower sequence: AT5G58160.1 (Arabidopsis thaliana), 5'ss of exon 12
GGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTGGTACAGGAACTATCAACCTCTGAAAATGATGGGCCTATATCAGAAACTTTCTGCAAGgtataagcgtcatgccttaaacacta-ttgtcttttc----ttttcttaaattgcccttgttt--attttcattgcttcaagtttcatatatatatatatatatata
||| ||||||||||||||||||||||| ||| | || ||||| ||||||||||| ||    || ||||||||||| || || ||  | |  ||   |||||||| |  |||||    | | ||||| |||||| |       ||||| || | |  |    |   |   |||| | ||  ||   | |  ||   |   | |     
GGCCGAGGAGATGCAAGCTATAAACAAGGGACTTGAGAAAGTCGTACAGGAACTTTCCTTGTCCGAAAATGATGGCCCGATTTCCCATAACTTTAACAAGgtatcactgtcat----tgatcactagttgtctctgtaaggctttctaaagtggaacaaaatagaaggctcatagattgtaggggctttgatccctgatttttc---

upper sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv11s0016g00160.t01 (Vitis vinifera), 5'ss of exon 14
GGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTGGTACAGGAACTATCAACCTCTGAAAATGATGGGCCTATATCAGAAACTTTCTGCAAGgtataagcgtcatgcct---taaacactatt-gtcttttcttttcttaaattgcccttgtttattttcattgcttcaagtttcatatatatatatatatatata
||| ||||| |||||||| || | ||||||||| || |||||  | |||||| | || | ||| ||||||||||| |||||||| |||| |||||| ||||||||   || |   ||   || |||  |||  | | |  || ||| | || |   ||  || |   ||  | ||  | |||| |  |  |  | ||  ||   
GGCAGAGGAAATGCAAGCGATTAGCAAAGGATTGGAGAAAGTTATGCAGGAATTGTCCAGCTCCGAAAATGATGGTCCTATATCTGAAAATTTCTGTAAGgtatac-tgtgaaaactagctagacaaaatttatgtatgtttgtctcatatggt--ttcattgtagacaaagtttacaatttctt-caagttcaaatgaatgac