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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAGGAATGTTAACAGATTTTGGAGAGAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAGgttcatgtttctgctattttctggaacatgtcaatttttaccttgtttgtaacttgtttttttatgaccattattcttcttgactgaaatatatttgtgt...

Basic information

species Glycine max
transcript GLYMA17G03570.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 17
GTTAAAGGAATGTTAACAGATTTTGGAGAGAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAGgttcatg--tttctgctattttctggaacatgtcaatttt-taccttgtttgtaacttgtttttttatgaccattattcttcttga-----ctgaaatatatttgtgt
|||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||||||| |||| |||| | || |||| ||||||||| ||| ||||||| | ||  | ||    ||||||| |    || |||||   | | || |||  || || ||   || | |      ||  | |||       |||||||| ||||   
GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGgtgcctgcatatcattcattttctag----tgacaattgcatgctttattta-aattttttaaattgtaattgaagtttctattgtaaattttgaaatatctttg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347786|gb|GR854035.1|GR854035
EST:     TTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAG                         AGGGACACTATTATTGACATATTCTTTGAGAGGCATTTGGGGCAATTGATT
genomic: TTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAGgttcatgttt ... catctgacagAGGGACACTATTATTGACATATTCTTTGAGAGGCATTTGGGGCAATTGATT
EST: gi|193631509|gb|FK583200.1|FK583200
EST:     TTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAG                         AGGGACACTATTATTGACATATTCTTTGAGAGGCATTTGGGGCAATTGATT
genomic: TTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAGgttcatgttt ... catctgacagAGGGACACTATTATTGACATATTCTTTGAGAGGCATTTGGGGCAATTGATT
EST: gi|207710077|gb|GD691167.1|GD691167
EST:     TTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAG                         AGGGACACTATTATTGACATATTCTTTGAGAGGCATT
genomic: TTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAGgttcatgttt ... catctgacagAGGGACACTATTATTGACATATTCTTTGAGAGGCATT