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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGGATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgtttgttggttgaattttgtgcattaagattataaggaattgtcatgacttttctttattctgttaacttctttttaattctgggaaatagtcttgactt...

Basic information

species Glycine max
transcript GLYMA17G00570.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 17
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 5'ss of exon 17
GTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGGATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgtttgttggttgaattttgtgcattaagattataaggaattgtcatgacttttctttattctgttaacttctttt-taattctgggaaatagtcttgactt
 ||||| ||||| || || || |  ||||| |||||| ||||||||||||||||||||||||| |||||||| || || || || || ||||| || |||||| |||  | |  || |||   | ||| || ||      | | |  | | || ||   ||   |  ||  || | |   | |  | |             
TTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAACGAAATCACTCGCCTCACTGCAGTAAAGgtt-gttcttgggcttctgt---tgaagctttta------ttttaaaattgtttttagctcaagtctctgattgtgtgggtgtatgcag------------

upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 18
GTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGGATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgtttgttggttgaattttgtgcattaagattataaggaattgtcatgacttttctttattctgttaacttc-tttttaattctgggaaata-gtcttgactt-------
 ||||| ||||| ||  | || |  |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||| |||  ||| || |     ||| |   ||||     || |   | || || ||     ||  |  ||| ||||||  || |  | | |  | || | ||       
TTCAACATTTGGTGATAACCTCAGAGCAGAATTACCTGCATGCCTTCCTGTACTTGTTGACCGGATGGGAAATGAGATAACTCGACTTACTGCTGTAAAGgttggttt-ttgcatct-----attgaccatata---ttttttagggcctgtttttggggttgacattttcctttttagatcagaaacagacatattcatttcattgga