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GGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtattaatactgcattcaatttttttaaaagacatattttgtgtttatgatggacaatatgaatgagagtaatttgtgtgtagtatgactgcactataaaggacttcctatatagtttggctaaaatggtgagattattaggtttctaaccctttgacccttcttag
species | Glycine max |
transcript | GLYMA16G19580.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGEST: gi|58014702|gb|CX701444.1|CX701444
genomic: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGEST: gi|192302191|gb|FG996613.1|FG996613
genomic: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: GGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGEST: gi|207683288|gb|GD666513.1|GD666513
genomic: GGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: AATGCAAATCTGCAAAATT ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGACATAGATATGAGEST: gi|22523089|gb|BU081900.1|BU081900
genomic: AATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
EST: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT ATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
genomic: GGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtatta ... cccttcttagATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTgtaagtattaatactgcattcaatttttttaaaagacatattttgtgtttatgatggacaatatgaatgagagtaatttgtgtgtagtatgactgcactataaaggacttcctatatagtttggctaaaatggtgagattattaggtttctaaccctttgacccttcttag
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA