1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttgtggctctagtttcaagtttgattcttctttatacagccttgaagaatagtttttgccctcccccctccccctcctatacagcctatgttaatagttttgtcatatctagtcactcttggtttaacgttgtcaaactttggaccatggatctacctgtacatatgaag
species | Glycine max |
transcript | GLYMA15G41690.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAG GTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGEST: gi|151400125|gb|EV269939.1|EV269939
genomic: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttg ... acatatgaagGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTG
EST: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAG GTT-GGGTTCATACATATTTACAAAEST: gi|7146475|gb|AW508397.1|AW508397
genomic: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttg ... acatatgaagGTTTGGGTTCATACATATTTACAAA
EST: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAG GTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGEST: gi|151404401|gb|EV274211.1|EV274211
genomic: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttg ... acatatgaagGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTG
EST: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAG GTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGEST: gi|208239673|gb|GE039165.1|GE039165
genomic: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttg ... acatatgaagGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTG
EST: GAATTGCTAACGACACTAATGCAG GTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGEST: gi|298198520|gb|HO040059.1|HO040059
genomic: GAATTGCTAACGACACTAATGCAGgtagttcttg ... acatatgaagGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTG
EST: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAG GTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTG
genomic: ATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttg ... acatatgaagGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttgtggctctagtttcaagtttgattcttctttatacagccttgaagaatagtttttgccctcccccctccccctcctatacagcctatgttaatagttttgtcatatctagtcactcttggtttaacgttgtcaaactttggaccatggatctacctgtacatatgaag
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG