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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAAAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGGgtatgatttttcttcatgccttaaacattgtgaaacatatttatttacatcattgaaaagtgacaccttatttatttgtgtctgattctatgttttttag

Basic information

species Glycine max
transcript GLYMA15G36890.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 17
CACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAAAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGGgtatg-atttttcttcatgccttaaacattgtgaaacatatttatttacatcattgaaaagtgacaccttatttatttgtgtctgat-tctatgttttttag
|||| || || ||||| || ||||| |||||||| || || |||||||| ||||||||||||||||||||||| || ||||| |||||||| || ||| ||||||  | |||| |  |    | |||  | ||||| ||    |   |  ||  | |   |||  |  ||| | | |||| | | || | |   | |   ||
CACATAGTTCTAAAAGTTACTATGCTTGTGTTGGAGAGAGTACTCATGCTTATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtatttccttgtattattaac-ctctgaaatatg---aaggaactctcttatttgtgctaaattactcacttgtttgttatgtttgcctctcacag

upper sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv14s0068g00840.t01 (Vitis vinifera), 5'ss of exon 10
CACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAAAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGGgtatgatttttcttcatgccttaaacattgtgaaacatatttatttacatcattgaaaagtgacaccttatttatttgtgtctgattctatgttttttag--
||    |  | |||||||||||||| ||| ||||||| ||||||| ||| || |||||||| || ||||| || ||  | || || ||| ||||     |||| |    |  ||||| |||   | ||    ||| | |   |   | |  |      | |  ||    | || ||        ||| | ||     ||   
CAAGGGGTGCTAAAAGCTATTATGCCTGTTTTGGGGAGAGCACTCGTGCTTACCAGAGCCCCTCCAAAGATCTCACTACAATTAACAACTGTTTGCGCAGgtacgccact--ttcatacctaccatatcacaaaaaaaaaaaaaaaaaaaaaaaccctattttcaaacaaattcttaaaaaaatattttgtggaaaataatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964330|gb|BM271067.1|BM271067
EST:     TATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGG                         CAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATGTGGGGTT
genomic: TATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGGgtatgatttt ... tgttttttagCAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATGTGGGGTT
EST: gi|31462666|gb|CD404694.1|CD404694
EST:     TATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGG                         CAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATGTGGGGTT
genomic: TATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGGgtatgatttt ... tgttttttagCAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATGTGGGGTT
EST: gi|58017323|gb|CX704065.1|CX704065
EST:     TATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGG                         CAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATGTGGGGTT
genomic: TATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTAAATGGgtatgatttt ... tgttttttagCAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATGTGGGGTT