Sequence
atgc intronic sequence ATGC exonic sequenceAGAAGAAGCTAACAACCTATCCAACATGGTCCATGCTGACAATGTAAGGCTTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTCAAAAGgtatataaacctttcatttgatggaagtacttgcatacctttataaagactgcattgacttaagtaaaaacttttagtag
Basic information
species | Glycine max |
transcript | GLYMA15G10310.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 17
lower sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 15
AGAAGAAGCTAACAACCTATCCAACATGGTCCATGCTGACAATGTAAGGCTTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTCAAAAGgtatataaacctttcatttgatggaagtacttgcataccttta-----taaagactg-cattgacttaagtaaaaacttttagtag
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AGAGGAAGCTAATAGTTTGTCAAACATGGTTCACTCCGACAATGTCAGGCTTGAGCATGATGTAGCGTTCCTCAAAGCTGTCCTAGACGATACACAAAAGgtaaaataatcctagtagatatacaagcgttttcaaaagactgaggattaaagtttaataccgttttgtgttatgggtttt-gtag
upper sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 15
AGAAGAAGCTAACAACCTATCCAACATGGTCCATGCTGACAATGTAAGGCTTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTCAAAAGgtatataa-acctttcat-ttgatggaagt-----acttgcatacctttataaagactgcattgacttaagtaaaaacttttagtag---------------
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AGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGgtttgtagcatcttgcaagttgattgaagttggtgacttgtaatttataatatctggtgaaccattttatgtaagc-ttattggaaattcatttcatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209720433|gb|BW669331.1|BW669331EST: TTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTCAAAAGTAG
genomic: TTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTC-AAA--AGgtatataaac ... cttttagt
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAGAAGCTAACAACCTATCCAACATGGTCCATGCTGACAATGTAAGGCTTGAGCATGACGTGGCTTTCCTCAAGGCTGTTTTAGATGATACTCAAAAGgtatataaacctttcatttgatggaagtacttgcatacctttataaagactgcattgacttaagtaaaaacttttagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT