Sequence
atgc intronic sequence ATGC exonic sequenceGTTTTCAGTTCAAGGTCTTTTAGGGAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGAACAATGGTGATTTTTCGTTTGGCACCACAGgtatttgttgctctctttcaatgtcattttaattttgtatataatttgatttcaaattttaattttaacatatatttgttgcag
Basic information
species | Glycine max |
transcript | GLYMA15G05680.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 5'ss of exon 13
--------GTTTTCAGTTCAAGGTCTTTTAGGGAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGAACAATGGTGATTTTTCGTTTGGCACCACAGgtatttgttgctctctttcaatgtcatttta-attttgtatataatttg-atttcaaattttaattttaacatat--atttgttgcag
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GGTCGGAAGTTTTCGATTCAAGGTCTTTTGGGAAAAGAAATATGCTCTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagtacaacttgtctttattgctttgtaggataaagacttttcatattatatggttcaattattgaatttcaaattgttgcag
upper sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv07s0095g00620.t01 (Vitis vinifera), 5'ss of exon 2
--------GTTTTCAGTTCAAGGTCTTTTAGGGAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGAACAATGGTGATTTTTCGTTTGGCACCACAGgtatttgttgctctctttcaatgtcattttaattttgtatataatttg-atttcaaat--tttaattttaacatat--atttgttgcag
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AGTCAGAAGTTTTCGACTCAAGGTCTTTTAGGAAAAGAAATTTGCTCTAGTTCTTTTATTAATGGAACCTTGGTGATATTCCGTTTAGCACCACGGgtatttggtacaacttgtctttattgctttg-taggataaagacttttcatatcatatggttcaattattgaattccaaattgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7029617|gb|AW459334.1|AW459334EST: GCTTTTGTTGATGGAACAATGGTGATTTTTCGTTTGGCACCACAG GATTATCACCGTTTCCATTTTCCAGTATCAGGAATTTTTGAGCAATCTGTA
genomic: GCTTTTGTTGATGGAACAATGGTGATTTTTCGTTTGGCACCACAGgtatttgttg ... tttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTTTTGAGCAATCTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTTCAGTTCAAGGTCTTTTAGGGAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGAACAATGGTGATTTTTCGTTTGGCACCACAGgtatttgttgctctctttcaatgtcattttaattttgtatataatttgatttcaaattttaattttaacatatatttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA