Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGgtaagcttgatttataaaatgtgttttattactttcaacctttttattgagatttttcagtattgtttagcattattggaatatttaacaaatcaacgtg...

Basic information

species Glycine max
transcript GLYMA15G04970.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04970.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 17
TTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGgtaagcttgatttataaaatgtgttttattactttcaacctttttattgagatttttcagtat---tgtttagca-ttattggaatatttaacaaatcaacgtg
 ||||| ||||| ||| | || ||||||||||||||||||||||| || ||||| ||||||| || || |||   | | | | |||| ||  |||  |  || || |||  | || | ||| |   | ||||  | ||  |     |||| |    |  ||   
CTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGGgtgagtttaattctcagatttttttttcttgtttt--attttatttttgtcacttct-agtttacatatttattaattggtttgtcatttgatgtttagactc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425984|gb|CA937504.1|CA937504
EST:     TCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGG                         GTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGC
genomic: TCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGgtaagcttga ... ttttaaacagGTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGC
EST: gi|27425844|gb|CA937364.1|CA937364
EST:     TCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGG                         GTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGC
genomic: TCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGgtaagcttga ... ttttaaacagGTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGC
EST: gi|14999778|gb|BI320592.1|BI320592
EST:     TCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGG                         GTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGC
genomic: TCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGgtaagcttga ... ttttaaacagGTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGC