1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GAGTGTACTGCCTATGAAGAAAAACAACTACTGGAGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTGgtaagatttgtttttaacatgctaagtttacttataatgttgtcaatgagtacttgaacataacattgcttttgatatttatcag
species | Glycine max |
transcript | GLYMA15G04830.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTG GTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAATTGTAGAACCAGTEST: gi|42722618|gb|CK768517.1|CK768517
genomic: AGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTGgtaagatttg ... tatttatcagGTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAATTGTAGAACCAGT
EST: AGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTG GTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAATTGTAGAACCAGTEST: gi|6915326|gb|AW396856.1|AW396856
genomic: AGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTGgtaagatttg ... tatttatcagGTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAATTGTAGAACCAGT
EST: AGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTG GTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAATTGTAGAACCAGT
genomic: AGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTGgtaagatttg ... tatttatcagGTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAATTGTAGAACCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGTACTGCCTATGAAGAAAAACAACTACTGGAGAAAGTGGCAGAAATGCTAGCAAGTTCTAATGCTAGAAAGAAACAGTTGgtaagatttgtttttaacatgctaagtttacttataatgttgtcaatgagtacttgaacataacattgcttttgatatttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA