Sequence
atgc intronic sequence ATGC exonic sequenceCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGgttagttctcaaaacccctatcattttttcagctgatcccacagaaacaaatgacgggattatgggtattgcagttttgatctgaacacgattttgcttt...
Basic information
species | Glycine max |
transcript | GLYMA15G03900.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv13s0175g00030.t01 (Vitis vinifera), 5'ss of exon 4
CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGgttagttctcaaaacccctatcattttttcagctgatcccacagaaacaaatgacgggattatgggtattgcagttttgatctgaacacgattttgcttt------
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-------CTTGGTGAATGCAGAATCATTCTATGTGAAGCAGGAGCTACGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcc------cctttagtgaacccacaattgttactcaataatctaactgatgaattatgcaaactgctagtactttttttttttttctttatcaaaaaaca
upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 5'ss of exon 15
CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGgttagttctcaaaacccctatcattttttcagctgatcccacagaaacaaatgacgggattatgggtattgc-agttttgatctgaacacgattttgcttt-----
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TTGTAAGCTTGGTGAATGCAGAATCATTCTATGTTAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagttc------cctttagtgaactcacaattgttactcaataatccaactgatgaattatgcaaactgctagtacttattttttctttatcaaaaaacaaaca
upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 16
CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGgttagttctca-----aaacccctatcattttttcagctgatcccacagaaacaaatgacg-ggattatgggtattgcagttttgatctgaacacgattttgcttt
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TTGTAAGCTTGGTGAATGCAGAATCATTCTATGTGAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccctttagtgaacccacaattgttactcaa-taatccaactga--tgaattatgcaaactgttagtacttttttttttctttatcaaaaaacaaac---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208230891|gb|GE033052.1|GE033052EST: GAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAG TGATGATGTTGCCTTTGCGCTGAGAGACTGCAAAGATCTACCTT
genomic: GAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGgttagttctc ... cctttggcagTGATGATGTTGCCTTTGCGCTGAGAGACTGCAAAGATCTGCCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGgttagttctcaaaacccctatcattttttcagctgatcccacagaaacaaatgacgggattatgggtattgcagttttgatctgaacacgattttgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacaaa