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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcag

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 19
AGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcag
 |||||||||||||| || ||||||| ||| |||||  | ||||||||||| || ||| | |||||||| || || || || ||||||||  |||| |||||| | |  ||         | |  || |||  || || |     ||||  || ||  ||    |||||| |  | || | || | | | |  || ||   | |            
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtatt-tgcta--------catttagtttaaccttccctt-----ttttgtcactt--ctcacattggttctgat-tattatcgaaacatgtgtcatatctgcag-----------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 19
AGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcag
 |||||||||||||| || ||||||| ||| |||||  | ||||||||||| || ||| | |||||||| || || || || ||||||||  |||| |||||| | |      |||  ||  |  || | |  || || |     ||||  || ||  ||    |||||| |  | || | || | | | |  || ||   | |            
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtattttt-----gctacgt--ttagtttgaccttccctt-----ttttgtcactt--ctcacattggttctgat-tattatcgaaacatgtgtcatatctgcag-----------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
AGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcag
 |||||||||||||| ||||||||||  || ||||| |||||||||||||| || ||| ||||||| || || ||||| || ||||| ||  |||||||||||   ||||    | |    ||    ||  |  |||||   || |  |  |  |   || ||   |     | ||||| ||   | |||    | |  | | ||||    || ||
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaa-atattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaag-----tatataacttttgtcaaa----cctg-tggcacat---ctgtag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
AGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataat-gtttccatgatatttttaacaa-ttatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcag
 ||||||||||||||||| ||||||| ||||||||| || ||||| |||||||| ||| |||| ||||| ||| | | ||| ||||| |||||||||||||||    | ||| | || |||   |  || || | ||     | |||  ||| || || |   |   |   |  ||| |                                       
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaa---aatagtgttttgtatatgtgattattgattattccacattcataaaaaattgtggctcactaagtcatttgtgcag-----------------------------------