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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGGgtaagtttgatttataaaatgtgtttttattactttcaacctttttattgagatttttcagtattgtttagcattattggaatatttaacaaataaatgt...

Basic information

species Glycine max
transcript GLYMA13G40430.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40430.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 17
TTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGGgtaagtttgatttataaaatgtgtttttattactttcaacctttttattgagatttttcagtat---tgtttagca-ttattggaatatttaacaaataaatgt
 ||||| ||||| ||| | || |||||||||||||| |||||||| || ||||| ||||||| ||||| |||  | | || | ||||| ||  |||  |  || || |||  | || | ||| |   | ||||  | ||  |     |||| |    || |   
CTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGGgtgagtttaattc-tcagatttttttttcttgtttt--attttatttttgtcacttct-agtttacatatttattaattggtttgtcatttgatgtttagactc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5677904|gb|AI939034.1|AI939034
EST:     TCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGG                         GTATGACAATCTTGTCATTCGGTTGGTGGGGCTAACCGTTTTTGCCTTTGC
genomic: TCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGGgtaagtttga ... tgttaaacagGTATGACAATCTTGTCATTCGGTTGGTGGGGCTAACCGTTTTTGCCTTTGC
EST: gi|23728239|gb|BU762167.1|BU762167
EST:     TCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGG                         GTATGACAATCTTGTCATTCGGTTGGTGGGGCTAACCGTTTTTGCCTTTGC
genomic: TCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTGCTTCTTGCTTGGGGgtaagtttga ... tgttaaacagGTATGACAATCTTGTCATTCGGTTGGTGGGGCTAACCGTTTTTGCCTTTGC