Sequence
atgc intronic sequence ATGC exonic sequenceAGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTgtaagtaccaaatagccacttaacggaaaagatggtctcatagcttgtaatcctgaatttgatgtcaccacttggttccaacttttaaaagatgcacgtt...
Basic information
species | Glycine max |
transcript | GLYMA13G22420.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os02g55410.2 (Oryza sativa), 5'ss of exon 16
AGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTgtaagtaccaaatagccacttaacggaaaagatggtctcatagcttgtaatcctgaatttgatgtcaccacttggttccaacttttaaaagatgcacgtt
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AGCTGAGGCACAAATAAAGAGAAGGATGGGAATTGGAAGCCACATATCCGAGCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTgtgaggaac---ctgtcatactatttgctatttaattaattgatttagtatcatttttcttatgctaccattcggctgc----ttcag------------
upper sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G450055_T01 (Zea mays), 5'ss of exon 18
AGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTgtaagtaccaaatagccacttaacggaaaagatggtctcatagcttgtaatcctgaatttgatgtcac-cacttggttccaacttttaaaagatgcacgtt--
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AGCGGAAGCACAGATAAAGCGAAGAATGGGCATTGGAAGCCACATATCTGAGCGACGGCTGATTGATGGACTAAACAGGATGGGAATGAACGAATCCATTgtacgaacctgtcgcgtatcttatgcctgaaataat-tgatggtttgtaagttagaataggaccactcatttttccgtataacaccttcaagctttgtttcag
upper sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G075978_T01 (Zea mays), 5'ss of exon 18
AGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTgtaagtaccaaatagcca---ctta--acggaaaagatggtctcatagcttgtaatcctgaatttgatgtcaccacttggttccaacttttaaaagatgcacgtt
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AGCGGAGGCACAAATAAAGAGAAGAATGGGCATCGGCAGCCACATATCCGAGCGACGGCTGATTGATGATCTAAACCGGATGGGGATGAATGAATCCATCgtaggaaccctgtcatcgaatcttagaactgaaactatggttttcaagtaagacccgttcgtttttctgacaatatcttgcacactttgtttcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193325302|gb|FK289662.1|FK289662EST: AAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATT GTAAGAAGAGCTCTTATAATCATGCACCAGAGAGACGAAATAGAGTACAAG
genomic: AAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTgtaagtacca ... ggttttgcagGTAAGAAGAGCTCTTATAATCATGCACCAGAGAGACGAAATAGAGTACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTgtaagtaccaaatagccacttaacggaaaagatggtctcatagcttgtaatcctgaatttgatgtcaccacttggttccaacttttaaaagatgcacgtt
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaga