1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GCTTGAGAAAAGGGTGAACAAGAAAGTGATGGCAATGTTTGAGAAGGCTGAAGATGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGgtaatttccaatctatttccacatttttctaactttcttccataaatgcttaatctatttatctatttatttttcctag
species | Glycine max |
transcript | GLYMA12G36520.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GCCTGAAGATGAGTACAATGATTTGATGTCCNNNNNNNNNCATAATTGAG AATGACAAGTCTAAAATCAAGATGGTGA-TGAAAGAGCTAGATGAGAAGAAEST: gi|58016495|gb|CX703237.1|CX703237
genomic: GGCTGAAGATGAGTACAATGATTTGATGTCC-AAAAAAAACATAATTGAGgtaatttcca ... tttttcctagAATGACAAGTCTAAAATCAAGATGGTGATTG-AAGAGCTAGATGAGAAGAA
EST: GGCTGAAGATGAGTACAATGATTTGATGTCCNNNNNNNNNCATAATTGAG AATGACAAGTCTAAAATCAAGATGGTGATTGAAGAGCTAGATGAGAAGAAGEST: gi|208208138|gb|GE003397.1|GE003397
genomic: GGCTGAAGATGAGTACAATGATTTGATGTCC-AAAAAAAACATAATTGAGgtaatttcca ... tttttcctagAATGACAAGTCTAAAATCAAGATGGTGATTGAAGAGCTAGATGAGAAGAAG
EST: AATGATTTGATGTCCAAAAAATACATAATTGAG AATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAG
genomic: AATGATTTGATGTCCAAAAAAAACATAATTGAGgtaatttcca ... tttttcctagAATGACAAGTCTAAAATCAAGATGGTGATTGAAGAGCTAGATGAGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGAGAAAAGGGTGAACAAGAAAGTGATGGCAATGTTTGAGAAGGCTGAAGATGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGgtaatttccaatctatttccacatttttctaactttcttccataaatgcttaatctatttatctatttatttttcctag
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG