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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtcttagtatttatctgctaattgaaagcaatgtcaaactcgttacattcttttgtgtcagagtgggttctctgctcactaatgcagattatacta...

Basic information

species Glycine max
transcript GLYMA12G28910.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28910.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv00s0227g00060.t01 (Vitis vinifera), 5'ss of exon 16
GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtcttagtatttatctgctaattgaaagcaatgtcaaactcgttacattcttttgtgtcagagtgggttctctgctcactaatgcagattatacta
|||||||| ||||||| || |||| |||||| ||| ||||||||||||||||||||||||||||| |||| || |  ||||| ||||| ||| |  |  || |     ||  | ||  |||    ||   |     ||  |||   |     | | ||||||      |  ||  | || |   |
GTGATAATGTAATTGTTGGGAGCAGAGAGGGAAAGTTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAAgtatgtcatgcttctttttgcagaaagggaaagaataaacaaaaagaagtttttgttttgttttcttttgtttctctttaacgttgtgtggcttttcaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427559|gb|CA939079.1|CA939079
EST:     ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAA                         GTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
genomic: ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtctta ... tacattgcagGTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
EST: gi|10231177|gb|BE800124.1|BE800124
EST:     ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAA                         GTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
genomic: ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtctta ... tacattgcagGTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
EST: gi|6951596|gb|AW423664.1|AW423664
EST:     ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAA                         GTGTCACCCAGAAGATATCAACAATGTCATCTGTCATCGCTCGTATCCTCT
genomic: ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtctta ... tacattgcagGTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
EST: gi|16344829|gb|BI970424.1|BI970424
EST:     ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAA                         GTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
genomic: ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtctta ... tacattgcagGTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
EST: gi|58016136|gb|CX702878.1|CX702878
EST:     ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAA                         GTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
genomic: ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtctta ... tacattgcagGTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
EST: gi|58015214|gb|CX701956.1|CX701956
EST:     ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAA                         GTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT
genomic: ATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtctta ... tacattgcagGTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtcttagtatttatctgctaattgaaagcaatgtcaaactcgttacattcttttgtgtcagagtgggttctctgctcactaatgcagattatacta

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