1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGACTGTGAGCGAGTGGATGAATATGGTCTTGGCCCCAGGGAGAATTTGGCTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagccaatggcgtcaatagctgctttggtaaatgtttgttaggaaaccagacccattatattgaaatggttatgagctgtttgcacaatttttactac...
species | Glycine max |
transcript | GLYMA12G04820.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACTGAGGTAGTCCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAEST: gi|18041035|gb|BM309329.1|BM309329
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagccaat ... ctatttgcagGGAACCGAGGTAGTCCCACCCAATTCAAGGTCACACACATGCTTGTTGTCA
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAA GGAACCGAGGTAGTCCCAEST: gi|193382838|gb|FK347715.1|FK347715
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagccaat ... ctatttgcagGGAACCGAGGTAGTCCCA
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACCGAGGTAGTCCCACCCAATTCAAEST: gi|13311361|gb|BG405012.1|BG405012
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagccaat ... ctatttgcagGGAACCGAGGTAGTCCCACCCAATTCAA
EST: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAG GGAACCGAGGTAGTCCCACCCAATTCAAGGTCACACACATGCTTGTTGTCA
genomic: CTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagccaat ... ctatttgcagGGAACCGAGGTAGTCCCACCCAATTCAAGGTCACACACATGCTTGTTGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACTGTGAGCGAGTGGATGAATATGGTCTTGGCCCCAGGGAGAATTTGGCTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGgtaagccaatggcgtcaatagctgctttggtaaatgtttgttaggaaaccagacccattatattgaaatggttatgagctgtttgcacaatttttactac
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG