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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgttttcatatgcattgggatatgatccagtgccaactggtgccaaacttttttaaatcacactttcaataacttttatccatctaaatagaaatgcttcaactaaactaggaaactcaatcttgtag

Basic information

species Glycine max
transcript GLYMA11G37250.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 17
lower sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
GTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgttttcatatgcattgggatatgatccagtgccaactggtgccaaacttttttaaatcacactttcaataacttttatccatctaaatagaaatgcttcaactaaactaggaaactcaatcttgtag
 || || ||||||||||||||||||||||| || || |||||||   ||||||  ||||| |||||||| |||||||| ||||| ||||||||||||||||||  |   |  |     ||| |||  | |  |||   ||  | |   |  || |||   |   | |   ||  ||  |||| | |    | | |    |  | ||                          
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttc---ttgagatgag-ttgagttgaaatagttaagagcctgtttggtagagctccaacaccaaaatttagctacaggagttgg---gtctgaag-------------------------

upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G461569_T01 (Zea mays), 5'ss of exon 16
GTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgttttcatatgcattgggatatgatccagtgccaactggtgccaaacttttttaaatcacactttcaataacttttatccatctaaatagaaatgcttcaactaaactaggaaactcaatcttgtag
 || || || || || ||||||||| ||||  | || || ||||   ||||||  |||||||||||||| || ||||| ||||| |||||||||||||| ||| ||   || | |  ||  |||||   |  | |   ||    |     ||||||   | | |   || ||     |||   |||| ||||||||| |    ||| |  ||||                  
ATCTTTCTTCGGCGCTAAACCAGAACTGGTTGTAAAGGGAGGTGCAATTGCATGGGCTAACATGGGTGATCCCAATGCTAGCATTCCAACACCTGAACCTgta-tggactcctttcaat--ggatactctg-aatataaagaatttgtctacttttacca-tgatgtttcca-----tttagcccatataaatagaagt----caatttcacta------------------

upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
GTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgttttcatatgcattgggatatgatccagtgccaactggtgccaaacttttttaaatcacactttcaataacttttatccatctaaatagaaatgcttcaactaaactaggaaactcaatcttgtag
 || || ||||| |||||||||||||||||||| ||||||||||   ||||||  |||||||||||||| |||||||| |||||||| ||||||||||||||||  | ||  |||  ||     ||| |   | ||  ||  |     ||| |      || ||| || |  | |   || ||      |||| | |||      |                          
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttattaatgaatttataacatactgagaagggaaaagaaagtg----gaaacaccctgtttacattgttcatgag--caaattgcaatttaatga--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31475006|gb|CD417034.1|CD417034
EST:     CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
genomic: CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
EST: gi|8283731|gb|BE021290.1|BE021290
EST:     CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
genomic: CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
EST: gi|151405862|gb|EV275677.1|EV275677
EST:     CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAG-CCTATG
genomic: CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATG
EST: gi|27425580|gb|CA937100.1|CA937100
EST:     CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
genomic: CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
EST: gi|7590807|gb|AW706551.1|AW706551
EST:     AACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
genomic: AACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
EST: gi|16345257|gb|BI970852.1|BI970852
EST:     CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
genomic: CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
EST: gi|16345254|gb|BI970849.1|BI970849
EST:     CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
genomic: CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
EST: gi|16277034|gb|BI942169.1|BI942169
EST:     CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCG                         GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC
genomic: CATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgtttt ... aatcttgtagGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACAC