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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgttccattgcttttataatttatctattgtaacatcatgctagttttaaaatacttagtcattgttcggttcttgcag

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgt-gtgttccattgc-ttttataatttatctattgtaacatcatgctagttttaaaatacttagtcattgttcggttcttgcag
||||||||||| || |||||||| || ||||| || || ||||| ||||| ||||||||||||||||||  | ||   ||    ||| |    | |||||| | ||    ||      |  |  |||    | ||||  | |         
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtctatttacaccattattgaacag---------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgt-gtgttccattgc-ttttataatttatctattgtaacatcatgctagttttaaaatacttagtcattgttcggttcttgcag
||||||||||| || |||||||| || ||||| || || ||||| ||||| ||||||||||||||||||  | ||   ||    ||| |    | |||||| | ||    ||      |  |  |||    | ||||  | |         
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtccatttacaccattattgaacag---------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgtg-tgttccat--tgcttttataatttatctattgtaacatcatgctagttttaaaatacttagtcattgttcggttcttgcag
|||||  |||||||||| ||||| || ||||| ||||||||||| ||||| |||||||| |||||||||| |||||  |  || | ||  ||| ||||| ||||    || || |  ||   || | | | | ||  |              
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtgttcagttatgttcttgaaatgtatctgttgt--tttcttgtttattaacaacttccttg-cacag--------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgt-gtgttccattgcttttataatttatctattgtaacatcatgctagttttaaaatactt-----agtca-ttgttcggttcttgcag----------
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| |||||||||||| |  |||  ||  ||||| |   ||||| || | |  |  |||   ||  ||| | | |     || || |||||  ||||||              
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttaga---tatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgttccattgcttttataatttatctattgtaacatcatgctagttt-taaaatacttagtcattgttcggttcttgcag
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||||||||    | || |  ||||   || | | | || |||  |  |||   ||   ||  | ||| | ||                 
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacag----------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgttccattgcttttataatttatctattgtaacatcatgctagttttaaaatacttagtcattgttcggttcttgcag
|||||| ||||||| || ||||| |||||||||||||| || |||||||| |||||||||||||| |      |  | |  ||   |   ||    |      |    | | ||||    ||||      |  |  ||   | ||||||
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaatt--gttggttgctaaacaactcgatgttcaagttgctgaatatcc---ctctactcaaat-ttgcag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtt-tgtgtgttccat-tgcttttataattta-tctattgtaacatcatgctagttttaaaatacttag-tcattgttcggttcttgcag
|||||| ||||||| || ||||||||||||||||||||||| |||||||| || |||||||||||  ||  | |   || |  |||  |  || |  ||| |      ||| | | |||  | || |||  | ||  | | | |         
CATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAGgtagtgcctctgaaatatattttggttgttaaacctactaagtggtcaagtt-gttgcataacactctgctccatatgcag---------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 18
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgttcca-ttgcttttataatttatctattgtaacatcatgctagttttaaaatacttagtcattgttcggttcttgcag
||||| || |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| | |  | ||  ||  ||| |   ||  |||  |       |  || | | |  ||||| | ||  |  ||| |         
CATTATACTGAGTTGCCAGATATAAAACGCGTCATTGTGAATACACATGCAATTGAGCCACAGgtttttatacttcaactgtgtttcttggttcactag-gaggttgtaaacttgctattgaatacgtggttctc-ttcag---------