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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagcttttacgactttgcatcttttgtgggtgataagttctttatgttacatatatatgcatgtatcaaacataggatgaacaagattgttgtatatgcag

Basic information

species Glycine max
transcript GLYMA11G05760.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os06g16390.1 (Oryza sativa), 5'ss of exon 15
AGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagcttttacgactttgcatcttttgtgggtgataagttctttatgttacata-tatatgcatgtatcaaacataggatgaacaagattgttgtatatgcag-
 ||||| ||||| ||| | || || |||   ||||| || ||||| |||||||||||||||||||| |||||||| || || || || |||||  || |||  || |   | |||    |     ||  ||     |||   |     || |||| | ||   || |  | | | ||   | | |     | |||  |   | | 
CGAGTACACTGGGGAGCTTATCTCCCATAAAGAAGCTGACAAGCGTGGAAAGATATATGACCGTGAGAATTCATCGTTCCTTTTCAACTTGAACAATGAGgtgag-tgcaaagacaccccgcaaattacggtctgcaagcattcaggattgcatactgtactgatttgactagcctaatgtcatc----cttttgcgtgaaccga

upper sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G157820_T01 (Zea mays), 5'ss of exon 1
AGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaag-------------cttttacgactttgcatcttttgtgggtga-taagttctttatgttacatatatatgcatgtatcaaacataggatgaacaagattgttgtatatgcag
 ||||| ||||| ||  | || || ||    |||||||||||||| |||||||||||||| ||||| || ||||| || || || ||  ||||  || ||| | |             | | | | |   | ||  |  | |   ||  | |   | | |||  ||   |       |   ||   |||| | |||     || |||  ||  ||||
TGAGTACACTGGGGAACTAATCTCACACAAAGAAGCAGATAAGCGTGGAAAGATATATGATCGTGAGAACTCATCGTTCCTTTTCAACCTGAACAATGAGgtaggtgtgcaagattatcctctgcaagcattcagttactatacttggctgaccacctgatgggactagtggtattgtccgtctgccatatgctgacttgtatcgtttgat-cgcag

upper sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 13
AGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagcttt---tacgactttgcatcttttgtgggtgataagttctttatgttacatatatatgcatgtatcaaacataggatgaacaagattgttgtatatgcag
 ||||| ||||||||  ||||||| ||  |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||| ||||||||||||||     |   ||| || ||     ||| ||     | |   | | ||| || ||| | | || ||     | | ||| ||    |||||||  | | | |||||
TGAGTACACTGGAGAACTGATTTCACACAGGGAAGCAGATAAGCGTGGAAAGATTTATGACCGTGAAAATTCTTCGTTTCTCTTTAATCTGAATGATCAGgcatatactcaatacaacctt-tgaatttggtttaaaacatactttctattttccattttt-tgaat-----agaaatatgaattgcaagattactttttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208232711|gb|GE029944.1|GE029944
EST:     AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATA
genomic: AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATA
EST: gi|23063121|gb|BU578542.1|BU578542
EST:     AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
genomic: AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
EST: gi|14990221|gb|BI315894.1|BI315894
EST:     TTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
genomic: TTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
EST: gi|22932691|gb|BU549830.1|BU549830
EST:     AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
genomic: AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
EST: gi|6913222|gb|AW394752.1|AW394752
EST:     AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
genomic: AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
EST: gi|208261748|gb|GE059515.1|GE059515
EST:     AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
genomic: AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
EST: gi|254325926|gb|GR838807.1|GR838807
EST:     AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
genomic: AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
EST: gi|254327703|gb|GR834668.1|GR834668
EST:     AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAG                         TTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT
genomic: AGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagctttt ... gtatatgcagTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCAT