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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgattcattgttaatgttgtgaagatttagtcaattatgttctctatacatagctgacatactaatcccaaacttgatatccacag

Basic information

species Glycine max
transcript GLYMA11G04290.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04290.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os04g10380.1 (Oryza sativa), 5'ss of exon 17
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatc-------ttgattcattgttaatgttg-tgaagatttagtcaattatgttctctatacatagc-tgacatactaatcccaaacttgatatccacag
|||||| |||||||||||| ||||||||||||| ||||| ||||| ||| | || ||  | || |||| ||||||| ||||  | ||||| ||||| ||||||         || | | | |    |||||  |||   |   |    |       || |   ||| | | |||||  |      |  ||| |   ||   
GAAGAGGTTTCCCATGTGCTTAATTTTTGGTGGTGATGGAAGCTATATGTCTCCATACTACCTACACAGTGATACATTGTTATCTAACCTTCTTGGCCAGgtaaaaataagattaacttaatagggatgttaatgacattcctggtgttccaaacttccaattatatcatcacataggacagttcactttgttccacatt-

upper sequence: GLYMA11G04290.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G015291_T01 (Zea mays), 5'ss of exon 9
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgattcattgttaatgttgtgaagatttagtcaattatgttctctatacatagctgacatactaatcccaaacttgatatccacag--------
|||||| |||||||||||  ||||||||||||| ||||| ||||| ||| | || ||  |||| || | ||||||| || |  | || || ||||| ||||||  || |    ||| | ||| |   |  |||||          | ||| |     ||   |  |  |  |     |   | |    |           
GAAGAGGTTTCCCATGTGTCTAATTTTTGGTGGTGATGGAAGCTATATGTCCCCATACTATCTACATAGTGATACATTGCTATCAAATCTTCTTGGCCAGgtaaattcagattttgctgatgataataccatttatgtttgggactgctccagctccagaaaatttggtgttggtggagcaggtcattaggtgctccaaa

upper sequence: GLYMA11G04290.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgattcattgttaatgttgtgaagatttagtcaattatgttctctatacatagctgacatactaatcccaaacttgatatccacag
||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||| | |||||||||||| ||| ||| ||| | ||||| || || ||||| ||||| | ||       | ||    || ||    |||    |  |||      | | |||     ||||  | |        ||| ||| | |||
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttttatttctgttcttttgaatagctataacaattgttcatt-tcaacattttcactatgtttttg-tatacccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773346|gb|BG238273.1|BG238273
EST:     CACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAG                         CATGTCCCGGCAACTGTTTGGAATCGCTTGG-AGCTGGACTGAATGCTCAG
genomic: CACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgat ... atatccacagCATGTCCCGGCAACTGTTTGGAATCGCTTGGTAGCTGGACTGAATGCTCAG